| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,542,149 – 7,542,269 |
| Length | 120 |
| Max. P | 0.856639 |
| Location | 7,542,149 – 7,542,269 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.00 |
| Mean single sequence MFE | -36.19 |
| Consensus MFE | -33.44 |
| Energy contribution | -33.36 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7542149 120 + 23771897 UGACUCUUCAAAGACCCCAAACUAAUGUUAAGAAUGGCCGAUUGGUCGCCCAUCCCGCUUGGGCUGGUCAACUUCAGGGUCAUCUGCCAGCUGGAGUCCAUAAGGUUGACUUUAGAGUUA (((((((.....(((((..(((....)))..((((((((((....))(((((.......))))).)))))..))).))))).((.(((...(((...)))...))).))....))))))) ( -35.80) >DroSec_CAF1 11356 120 + 1 UGACUCUUCAAAGACCCCAAACCAAUCUUAAGAAUGGCCGAUUGGUCGCCCAUCCCGCUUGGGCUGGUCAACUUCAGGGUCAUCUGCCAGCUGGAGUCCAUAAGGUCGACUUUAGAGUUA (((((((.....(((((((.(((((((............))))))).(((((.......))))))))...((((((((((.....)))..)))))))......))))......))))))) ( -39.00) >DroSim_CAF1 11265 120 + 1 UGACUCUUCAAAGACCCCAAACCAAUCUUAAGAAUGGCCAAUUGGUCGCCCAUCCCGCUUGGGCUGGUCAACUUCAGGGUCAUCUGCCAGCUGGAGUCCAUAAGGUCGACUUUAGAGUUA (((((((.....((((....((((...........((((....))))(((((.......)))))))))..((((((((((.....)))..)))))))......))))......))))))) ( -38.80) >DroEre_CAF1 11487 120 + 1 UGACACUUCAAAGACCAGAAACAAAUCUUAAGAAUGGCCAAUUGGUCGCCCAUCCCGCUUGGGCAGGUCAACUUCAGGGUCAUCUGCCAGCUGGGGUCCAUAAGGUCGACUUCAGAGUUA .(((.(((....((((...................((((....))))(((((.......))))).)))).((((((((((.....)))..)))))))....))))))((((....)))). ( -34.40) >DroYak_CAF1 11358 120 + 1 UGACUCUGCAAAGGCCAGAAACAAAUCUUAAGAAUGGCCGAUUGGUCGCACAUCCCACUUGGGCAGGUCAACUUCAGGGUCAUCUGCCAGCUGGAGUCCAUAAGGUCCACUUUAGAGUUA (((((((((...(((((.................)))))((....))))..........(((((..((..((((((((((.....)))..)))))))..))...)))))....))))))) ( -32.93) >consensus UGACUCUUCAAAGACCCCAAACAAAUCUUAAGAAUGGCCGAUUGGUCGCCCAUCCCGCUUGGGCUGGUCAACUUCAGGGUCAUCUGCCAGCUGGAGUCCAUAAGGUCGACUUUAGAGUUA (((((((.....((((...................((((....))))(((((.......))))).((...((((((((((.....)))..)))))))))....))))......))))))) (-33.44 = -33.36 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:46 2006