Locus 2702

Sequence ID 3L_DroMel_CAF1
Location 7,541,850 – 7,541,970
Length 120
Max. P 0.622294
window4233

overview

Window 3

Location 7,541,850 – 7,541,970
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.92
Mean single sequence MFE -41.14
Consensus MFE -34.06
Energy contribution -34.18
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.37
Structure conservation index 0.83
SVM decision value 0.18
SVM RNA-class probability 0.622294
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7541850 120 - 23771897
GCACCGAACGACCAGCCCUGCAGCAUCAUGCAGGCGGUCAACAAGGAUCCGGUGGACACGAAGCCAGCAUUGCACUGAAGACGGCAAACGUCACCAAAUCGAGAUGGACCCUGAGUGCAG
(((((....((((.(((.((((......)))))))))))....(((.((((.(((........))).)...........((((.....)))).............))).)))).)))).. ( -40.20)
>DroSec_CAF1 11057 120 - 1
GUACCGAACGACCAGCCCUGCAACACCAUGCAGGCGGUCAACAAGGAUCCGGUGGGCACGAAGCCAGCAUUGCACUGGAGAUGGCAAACGUCACCAAAUCGGGAUGGACCCUGAGUGCAG
.((((....((((.(((.((((......))))))))))).....(....)))))(((.....))).....((((((((.((((.....)))).)))..(((((......)))))))))). ( -44.30)
>DroSim_CAF1 10966 120 - 1
GUACCGAACGACCAGCCCUGCAACACCAUGCAGGCGGUCAACAAGGAUCCGGUGGGCACGAAGCCAGCAUUGCACUGAAGAUGGCAAACGUCACCAAAUCGGGAUGGACCCUGAGUACAG
(((((....((((.(((.((((......)))))))))))....(((.((((((.(((.....))).))......((((.(.((((....)))).)...))))..)))).)))).)))).. ( -38.80)
>DroEre_CAF1 11167 120 - 1
GUACCGAACGACCAGCCUUGCAACACCAUGCAGGCGGUCAACAUGGAUCCGGUGGGCAUGAAGCCAGCAUUGCACUGAAGUUGGCAAAUGUCUCCAAAUCGGGAUGGACCCUGAGUGCAG
((((.....((((.((((.(((......)))))))))))...........((.((((((...((((((.((.....)).))))))..))))))))...(((((......))))))))).. ( -42.90)
>DroYak_CAF1 11059 120 - 1
GUACCGAAUGACCAGCCCUGCAACACCAUGCAGGAGGUCAACAUGGAUCCGGUGGGCACGUAGCCAGAAUUGCACUGAAGUUGACAAAUGUCGCCAAAUCGGGAUGGACCCUGAGUGCAG
.((((...(((((...((((((......)))))).)))))....(....)))))(((.....))).....(((((....(.((((....)))).)...(((((......)))))))))). ( -39.50)
>consensus
GUACCGAACGACCAGCCCUGCAACACCAUGCAGGCGGUCAACAAGGAUCCGGUGGGCACGAAGCCAGCAUUGCACUGAAGAUGGCAAACGUCACCAAAUCGGGAUGGACCCUGAGUGCAG
.((((....((((...((((((......)))))).)))).....(....)))))(((.....))).....(((((.......(((....)))......(((((......)))))))))). (-34.06 = -34.18 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:45 2006