Locus 2701

Sequence ID 3L_DroMel_CAF1
Location 7,540,893 – 7,541,013
Length 120
Max. P 0.966723
window4232

overview

Window 2

Location 7,540,893 – 7,541,013
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.67
Mean single sequence MFE -43.68
Consensus MFE -37.06
Energy contribution -38.74
Covariance contribution 1.68
Combinations/Pair 1.05
Mean z-score -1.85
Structure conservation index 0.85
SVM decision value 1.60
SVM RNA-class probability 0.966723
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7540893 120 - 23771897
UGUCCACACACUUGUCGUCCGAUCCCAGGGUAUAACCCGGAUUGCAUUCAAUUGGAGCACAUCCAUCCGCGGAUCGCUGAGUUCCCGGUGGACAACCCACCAGAGCGGGACUACAGCUAC
...........((((.((((((((((.(((.....)))(((((((.(((....)))))).))))....).))))).....((((..(((((.....))))).)))).)))).)))).... ( -43.00)
>DroSec_CAF1 10102 120 - 1
UGUCCACACACUUGUCGUCCGAUCCCAGGGUAUAACCCGGAUUACAUUCAAUUGGAGCACAUCCAUCGGCGGAUCGCUGAGUGCCCGGCGGACAACCCACCAGAGCGGGACGACAGCUGC
........((.((((((((((((((..(((.....)))))))).(.(((....((.((((.....((((((...))))))))))))((.((.....)).)).))).)))))))))).)). ( -44.30)
>DroSim_CAF1 10011 120 - 1
UGUCCACACACUUGUCGUCCGAUCCCAGGGUAUAACCCGGAUUACAUUCAAUUGGAGCACAUCCAUCGGCGGAUCGCUGAGUGCCCGGCGGACAACCCACCAGAGCGGGACGACAGCUGC
........((.((((((((((((((..(((.....)))))))).(.(((....((.((((.....((((((...))))))))))))((.((.....)).)).))).)))))))))).)). ( -44.30)
>DroEre_CAF1 10219 120 - 1
UGUCCACACACUUGUCGUCCGAUCCCAGGAUAAAGCCCGGUUUACAUUCAAUUGGAGCACAUCCCUCGGCGGAUCGCUGAGUGCCCGGUGGACAACCCACCAGAGCGGGACGACAGCUGC
........((.(((((((((.......((((...((((((((.......)))))).))..))))(((((((...)))))))((((.(((((.....))))).).)))))))))))).)). ( -45.20)
>DroYak_CAF1 10107 120 - 1
UGUCCACACAUUUGUCGUCCGAUCCCAGGAUGAAACCCGAAUUACAUUCAAUUGGAGCACAUCCCUCGGCGGAUCGCUGAGUGCCCGGUGGACAGCCCACCAGAGCGGGAUGACAACUGC
........((.(((((((((.......(((((....((((...........))))....)))))(((((((...)))))))((((.(((((.....))))).).)))))))))))).)). ( -41.60)
>consensus
UGUCCACACACUUGUCGUCCGAUCCCAGGGUAUAACCCGGAUUACAUUCAAUUGGAGCACAUCCAUCGGCGGAUCGCUGAGUGCCCGGUGGACAACCCACCAGAGCGGGACGACAGCUGC
........((.((((((((((((((..(((.....)))))))).(.(((....((.((((.....((((((...))))))))))))(((((.....))))).))).)))))))))).)). (-37.06 = -38.74 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:44 2006