Locus 270

Sequence ID 3L_DroMel_CAF1
Location 770,919 – 771,023
Length 104
Max. P 0.883283
window403

overview

Window 3

Location 770,919 – 771,023
Length 104
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 73.84
Mean single sequence MFE -29.52
Consensus MFE -15.95
Energy contribution -16.20
Covariance contribution 0.25
Combinations/Pair 1.06
Mean z-score -1.84
Structure conservation index 0.54
SVM decision value 0.93
SVM RNA-class probability 0.883283
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 770919 104 - 23771897
UG---------GUUGUUUU-GUU-UUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGGCGAAAAGCA--GCCAGGUGGGACUGGGACAGGUAC
((---------((((((((-(((-...(((((((((((.....))))......))))))).)))...(((((.......))))).))))))--)))).......(((...))).... ( -32.70)
>DroPse_CAF1 137885 93 - 1
UU---------UUUCCUCUCUUU-UCGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGCUGAG-AGAG--GCCGAGCGAG-----------CGA
..---------...((((((((.-((.(((((((((((.....))))......))))))).)).....(((........))).)))-))))--).........-----------... ( -26.40)
>DroWil_CAF1 138875 103 - 1
UU---------GUUGUU-G-CUU-UUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCAAGACUAACGCCCCAUAAAUGGGCGAGA-GCAUAGACA-AUGAGACUUUCACCGUGAC
((---------(((..(-(-(((-(...((((((((((.....))))......))))))........(((((.......))))))))-)))..))))-).................. ( -25.80)
>DroYak_CAF1 133298 105 - 1
UG---------GUUGUUUU-GUUUUUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGGCGAAAAGCA--GCCAGGUGGGACUGGGACAGGUAA
((---------.(((((((-((((((.(((((((((((.....))))......))))))).......(((((.......))))))))))))--)((((......))))))))).)). ( -34.00)
>DroAna_CAF1 146197 104 - 1
UGCGGGGCUCUGUGGUUUU-GUU-UUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGGUGAGA-GCA--CUC------GACCGUCAUCA--GC
..(((((((((.((((((.-...-...(((((((((((.....))))......))))))))))))).(((((.......))))))))-)).--)))------)..........--.. ( -31.81)
>DroPer_CAF1 143643 93 - 1
UU---------UUUCCUCUCUUU-UCGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGCUGAG-AGAG--GCCGAGCGAG-----------CGA
..---------...((((((((.-((.(((((((((((.....))))......))))))).)).....(((........))).)))-))))--).........-----------... ( -26.40)
>consensus
UG_________GUUGUUUU_GUU_UUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGGCGAGAAGCA__GCCA_GUGAGACUG__AC_G_CAA
...........................(((((((((((.....))))......))))))).......(((((.......)))))................................. (-15.95 = -16.20 +   0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:55 2006