Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 770,919 – 771,023 |
Length | 104 |
Max. P | 0.883283 |
Location | 770,919 – 771,023 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 73.84 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -15.95 |
Energy contribution | -16.20 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.06 |
Mean z-score | -1.84 |
Structure conservation index | 0.54 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 770919 104 - 23771897 UG---------GUUGUUUU-GUU-UUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGGCGAAAAGCA--GCCAGGUGGGACUGGGACAGGUAC ((---------((((((((-(((-...(((((((((((.....))))......))))))).)))...(((((.......))))).))))))--)))).......(((...))).... ( -32.70) >DroPse_CAF1 137885 93 - 1 UU---------UUUCCUCUCUUU-UCGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGCUGAG-AGAG--GCCGAGCGAG-----------CGA ..---------...((((((((.-((.(((((((((((.....))))......))))))).)).....(((........))).)))-))))--).........-----------... ( -26.40) >DroWil_CAF1 138875 103 - 1 UU---------GUUGUU-G-CUU-UUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCAAGACUAACGCCCCAUAAAUGGGCGAGA-GCAUAGACA-AUGAGACUUUCACCGUGAC ((---------(((..(-(-(((-(...((((((((((.....))))......))))))........(((((.......))))))))-)))..))))-).................. ( -25.80) >DroYak_CAF1 133298 105 - 1 UG---------GUUGUUUU-GUUUUUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGGCGAAAAGCA--GCCAGGUGGGACUGGGACAGGUAA ((---------.(((((((-((((((.(((((((((((.....))))......))))))).......(((((.......))))))))))))--)((((......))))))))).)). ( -34.00) >DroAna_CAF1 146197 104 - 1 UGCGGGGCUCUGUGGUUUU-GUU-UUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGGUGAGA-GCA--CUC------GACCGUCAUCA--GC ..(((((((((.((((((.-...-...(((((((((((.....))))......))))))))))))).(((((.......))))))))-)).--)))------)..........--.. ( -31.81) >DroPer_CAF1 143643 93 - 1 UU---------UUUCCUCUCUUU-UCGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGCUGAG-AGAG--GCCGAGCGAG-----------CGA ..---------...((((((((.-((.(((((((((((.....))))......))))))).)).....(((........))).)))-))))--).........-----------... ( -26.40) >consensus UG_________GUUGUUUU_GUU_UUGGGCAAUUUGUCUAAAUGACACUAACUAAUUGCCAGACUAACGCCCCAUAAAUGGGCGAGAAGCA__GCCA_GUGAGACUG__AC_G_CAA ...........................(((((((((((.....))))......))))))).......(((((.......)))))................................. (-15.95 = -16.20 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:55 2006