Locus 27

Sequence ID 3L_DroMel_CAF1
Location 107,058 – 107,154
Length 96
Max. P 0.994095
window33

overview

Window 3

Location 107,058 – 107,154
Length 96
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.46
Mean single sequence MFE -21.99
Consensus MFE -16.22
Energy contribution -15.78
Covariance contribution -0.44
Combinations/Pair 1.26
Mean z-score -2.56
Structure conservation index 0.74
SVM decision value 2.45
SVM RNA-class probability 0.994095
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 107058 96 + 23771897
---CUUCCACGGAUACCUCAACCUAUUUUCC---------------------CCUGGAAUCCCAAACUGUCCUUUUUCUCCUCCUUGAGGCGUCUGUGACUUCCGUUUAUUGCAGUUGCC
---....((((((..((((((..........---------------------...(((...........)))............))))))..)))))).............((....)). ( -18.71)
>DroSec_CAF1 43011 96 + 1
---CUUCCACAGACACCUCAACCUAUUUUCC---------------------CCUGGAAUCCCAAACUGUCCUUACUAUCCUCCUUGAGGCGUCUGUGACUUACGUUUAUUGCAGUUGCC
---....(((((((.((((((..........---------------------...(((...........)))............)))))).))))))).............((....)). ( -21.51)
>DroSim_CAF1 48446 96 + 1
---CUUCCACGGAUACCUCAACCUAUUUUCC---------------------CCUGGAAUCCCAAACUGUCCUUACUAUCCUACUUGAGGCGUCUGUGACUUACGUUUAUUGCAGUUGCC
---....((((((..((((((..........---------------------...(((...........)))............))))))..)))))).............((....)). ( -18.71)
>DroEre_CAF1 62983 119 + 1
AUUCUUCCACAGACACCUCAACCCAUUUUCCAAGUACUAUGCACAAUGUACC-CUGGAGUCUCAAACUGUUCUUUCUCUCCCCCUUGAGACGUCUGUGACUUACGCUUAUUGCAGUUGGC
.......(((((((..............((((.((((..........)))).-.))))(((((((...................)))))))))))))).((.((((.....)).)).)). ( -28.11)
>DroYak_CAF1 60151 120 + 1
AUUCUUCCACAGACGCCUCAACCUAUUUUCCAAGUACUACGCACAAUGUACCCCUUGAAUCCCAAACUGUCCUCCCACUCCCCCUUGAGACGUCUGUGACUUACGCUUAUUGCAGUUGGC
.......((((((((.(((((............((((..........))))...(((.....)))...................))))).)))))))).((.((((.....)).)).)). ( -22.90)
>consensus
___CUUCCACAGACACCUCAACCUAUUUUCC_____________________CCUGGAAUCCCAAACUGUCCUUACUCUCCUCCUUGAGGCGUCUGUGACUUACGUUUAUUGCAGUUGCC
.......(((((((.((((((.................................(((....)))....(......)........)))))).)))))))......((.....))....... (-16.22 = -15.78 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:13 2006