Locus 2698

Sequence ID 3L_DroMel_CAF1
Location 7,536,351 – 7,536,603
Length 252
Max. P 0.998866
window4216 window4217 window4218 window4219 window4220 window4221 window4222 window4223 window4224

overview

Window 6

Location 7,536,351 – 7,536,471
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.67
Mean single sequence MFE -23.98
Consensus MFE -21.52
Energy contribution -21.60
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 0.90
SVM decision value 1.75
SVM RNA-class probability 0.975572
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536351 120 + 23771897
UGAUAAUACCAUGGGUAAAAAUAGCUUUCCUCUACGCGUCCCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAA
..........((((((....(((((..........(((((((.....)).)))....(((((....)))))......))....((((((.......)))))))).)))....)))))).. ( -25.40)
>DroSec_CAF1 5443 120 + 1
UGAUAAUACCAUGGGUAAAAAUAGCCUCCCCCUUCGCGUCCCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCUAUGAAAUAUCAGCAUAUAUACACCCAUAA
..........((((((....(((((..........(((((((.....)).)))....(((((....)))))......))....((((((.......)))))))).)))....)))))).. ( -25.00)
>DroSim_CAF1 5385 120 + 1
UGAUAAUACCAUGGGUAAAAAUAGCCUCCCUCUUCGCGUCCCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAA
..........((((((....(((((..........(((((((.....)).)))....(((((....)))))......))....((((((.......)))))))).)))....)))))).. ( -25.00)
>DroEre_CAF1 5615 120 + 1
UGAUAAUACCGUGGGUAAAAAUAGCCUCCCUCUUUACGUCCCUCUCUGGUGACAUUUGUGUGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAA
..........((((((.....................(((((.....)).)))...(((((((....(((......)))....((((((.......)))))))))))))...)))))).. ( -26.60)
>DroYak_CAF1 5577 120 + 1
UGAUAAUACCAUCGGUAAAAAUAGCCUCCCUCUUUACGCCCCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAA
(((((....(((.((((.....(((...........((((.......))))......(((((....)))))......)))......)))).)))...))))).................. ( -17.90)
>consensus
UGAUAAUACCAUGGGUAAAAAUAGCCUCCCUCUUCGCGUCCCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAA
..........((((((......(((............(((((.....)).)))....(((((....)))))......)))...((((((.......))))))..........)))))).. (-21.52 = -21.60 +   0.08)

alignment

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secondary structure

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Window 7

Location 7,536,351 – 7,536,471
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.67
Mean single sequence MFE -32.28
Consensus MFE -32.04
Energy contribution -31.72
Covariance contribution -0.32
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.99
SVM decision value 3.11
SVM RNA-class probability 0.998479
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536351 120 - 23771897
UUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGGGACGCGUAGAGGAAAGCUAUUUUUACCCAUGGUAUUAUCA
(((((((((...(((.(((((((((.....)))))).....((......((((....))))......(((.((....)).))))).........))))))...)))))))))........ ( -34.30)
>DroSec_CAF1 5443 120 - 1
UUAUGGGUGUAUAUAUGCUGAUAUUUCAUAGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGGGACGCGAAGGGGGAGGCUAUUUUUACCCAUGGUAUUAUCA
(((((((((...(((.(((((((((.....)))))).....((......((((....))))......(((.((....)).))))).........))))))...)))))))))........ ( -34.10)
>DroSim_CAF1 5385 120 - 1
UUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGGGACGCGAAGAGGGAGGCUAUUUUUACCCAUGGUAUUAUCA
(((((((((...(((.(((((((((.....)))))).....((......((((....))))......(((.((....)).))))).........))))))...)))))))))........ ( -34.30)
>DroEre_CAF1 5615 120 - 1
UUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCACACAAAUGUCACCAGAGAGGGACGUAAAGAGGGAGGCUAUUUUUACCCACGGUAUUAUCA
(..((((((...(((.(((((((((.....)))))).............((((....))))....(((((.((.....))))))).........))))))...))))))..)........ ( -30.90)
>DroYak_CAF1 5577 120 - 1
UUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGGGGCGUAAAGAGGGAGGCUAUUUUUACCGAUGGUAUUAUCA
((((.((((...(((.(((((((((.....)))))).............((((....))))....(((((.((....)).))))).........))))))...)))).))))........ ( -27.80)
>consensus
UUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGGGACGCGAAGAGGGAGGCUAUUUUUACCCAUGGUAUUAUCA
(((((((((...(((.(((((((((.....)))))).....((......((((....))))......(((.((.....))))))).........))))))...)))))))))........ (-32.04 = -31.72 +  -0.32)

alignment

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secondary structure

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Window 8

Location 7,536,391 – 7,536,489
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 92.52
Mean single sequence MFE -16.30
Consensus MFE -15.31
Energy contribution -15.12
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -1.83
Structure conservation index 0.94
SVM decision value 1.23
SVM RNA-class probability 0.933669
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536391 98 + 23771897
CCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAAACUUAUAUAUAUAUAUAU
.......((((......(((((....))))).....((((....(((((.......)))))))))......))))....................... ( -15.60)
>DroSim_CAF1 5425 98 + 1
CCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAAACGUAUAUAUAUACAUAU
.......((((......(((((....))))).....((((....(((((.......)))))))))......)))).......((((....)))).... ( -17.10)
>DroEre_CAF1 5655 98 + 1
CCUCUCUGGUGACAUUUGUGUGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAAACAUGCAGAUAUAUAUAU
.......((((.....(((((((....(((......)))....((((((.......)))))))))))))..))))....................... ( -16.50)
>DroYak_CAF1 5617 90 + 1
CCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAAACG--------UAUAUAU
......((....))...(((((....))))).....((((....(((((.......)))))))))(((((((..........)--------)))))). ( -16.00)
>consensus
CCCCUCUGGUGACAUUUGUGCGCUCUCGCACUAAUUUGCUUUAUGAUAUCAAUGAAAUAUCAGCAUAUAUACACCCAUAAACGUAUAUAUAUAUAUAU
.......((((......(((((....))))).....((((....(((((.......)))))))))......))))....................... (-15.31 = -15.12 +  -0.19)

alignment

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secondary structure

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dotplot

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Window 9

Location 7,536,391 – 7,536,489
Length 98
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 92.52
Mean single sequence MFE -23.30
Consensus MFE -21.89
Energy contribution -21.70
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -2.16
Structure conservation index 0.94
SVM decision value 1.84
SVM RNA-class probability 0.979439
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536391 98 - 23771897
AUAUAUAUAUAUAUAAGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGG
.(((((....)))))........((((.((((.((((((((((.....))))))....)))).....((((....))))....))))))))....... ( -21.90)
>DroSim_CAF1 5425 98 - 1
AUAUGUAUAUAUAUACGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGG
....((((((((((((.(....).))))))))))))(((((((.....)))))))............((((....))))..........((....)). ( -26.10)
>DroEre_CAF1 5655 98 - 1
AUAUAUAUAUCUGCAUGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCACACAAAUGUCACCAGAGAGG
.(((((((((((..(....)..)))))))))))((((((((((.....))))))....)))).....((((....))))................... ( -22.90)
>DroYak_CAF1 5617 90 - 1
AUAUAUA--------CGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGG
.......--------(.(((...((((.((((.((((((((((.....))))))....)))).....((((....))))....)))))))).))).). ( -22.30)
>consensus
AUAUAUAUAUAUAUACGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAAAGCAAAUUAGUGCGAGAGCGCACAAAUGUCACCAGAGGGG
.......................((((.((((.((((((((((.....))))))....)))).....((((....))))....))))))))....... (-21.89 = -21.70 +  -0.19)

alignment

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secondary structure

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Window 0

Location 7,536,431 – 7,536,523
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -19.75
Consensus MFE -13.01
Energy contribution -15.70
Covariance contribution 2.69
Combinations/Pair 1.13
Mean z-score -2.32
Structure conservation index 0.66
SVM decision value 0.02
SVM RNA-class probability 0.543710
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536431 92 - 23771897
AACGUGAAAACAGUUUUUCGAUGUCUCCAAAGAUAUAUAUAUAUAUAUAAGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAA
...((....))........((((((.....((.(((((((((((.((((....)))).)))))))))))))((....))...)))))).... ( -17.70)
>DroSim_CAF1 5465 92 - 1
AACGAGAAAACAGUUUUCCGAUGUCUCCAAAGAUAUAUGUAUAUAUAUACGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAA
...(((((.....))))).((((((.....((((((..((((((((((((.(....).))))))))))))..))))))....)))))).... ( -23.40)
>DroEre_CAF1 5695 91 - 1
AACGAGAA-ACAGUUUUUCGGUGUCUCCAAAGAUAUAUAUAUAUCUGCAUGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAA
..((((((-.....))))))..........((.(((((((((((((..(....)..)))))))))))))))((((((.....)))))).... ( -19.40)
>DroYak_CAF1 5657 84 - 1
AACGAGAAAACCAUUUUUCGAUGUCUCCAAAGAUAUAUAUA--------CGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAA
...((((((....))))))((((((.......(((((((((--------(.(....).))))))))))..(((....)))..)))))).... ( -18.50)
>consensus
AACGAGAAAACAGUUUUUCGAUGUCUCCAAAGAUAUAUAUAUAUAUAUACGUUUAUGGGUGUAUAUAUGCUGAUAUUUCAUUGAUAUCAUAA
...((((((....))))))((((((.....((((((...(((((((((((.(....).)))))))))))...))))))....)))))).... (-13.01 = -15.70 +   2.69)

alignment

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secondary structure

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Window 1

Location 7,536,471 – 7,536,563
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 89.31
Mean single sequence MFE -20.02
Consensus MFE -19.15
Energy contribution -18.90
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -2.11
Structure conservation index 0.96
SVM decision value 1.94
SVM RNA-class probability 0.983348
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536471 92 + 23771897
ACUUAUAUAUAUAUAUAUAUCUUUGGAGACAUCGAAAAACUGUUUUCACGUUCCCUUCGAGAAAAGUCAGAAUUUCUUUGGCUCCUCAGUCU
...((((((....)))))).((..((((.((..((((..((((((((.((.......)).)))))..)))..))))..)).))))..))... ( -16.90)
>DroSim_CAF1 5505 92 + 1
ACGUAUAUAUAUACAUAUAUCUUUGGAGACAUCGGAAAACUGUUUUCUCGUUCCCUUCGAGAAAAGUCAGAAUUUCUUUGGCUCCUCAGUCU
..((((....))))......((..((((.((..((((..(((((((((((.......))))))))..)))..))))..)).))))..))... ( -21.70)
>DroEre_CAF1 5735 91 + 1
ACAUGCAGAUAUAUAUAUAUCUUUGGAGACACCGAAAAACUGU-UUCUCGUUCCCUUCGAGAAAAGUCAGAAUUUCUUUGGCUCCUCAGUCU
......((((((....))))))..((((.((..((((..((((-((((((.......)))))))...)))..))))..)).))))....... ( -21.00)
>DroYak_CAF1 5697 84 + 1
ACG--------UAUAUAUAUCUUUGGAGACAUCGAAAAAUGGUUUUCUCGUUCCCUUCGAGAAAAGUCCGAAUUUCUUUGGCUCCUCAGUCU
...--------.........((..((((.((..((((..(((((((((((.......))))))))..)))..))))..)).))))..))... ( -20.50)
>consensus
ACGUAUAUAUAUAUAUAUAUCUUUGGAGACAUCGAAAAACUGUUUUCUCGUUCCCUUCGAGAAAAGUCAGAAUUUCUUUGGCUCCUCAGUCU
....................((..((((.((..((((..(((.(((((((.......)))))))...)))..))))..)).))))..))... (-19.15 = -18.90 +  -0.25)

alignment

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secondary structure

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dotplot

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Window 2

Location 7,536,471 – 7,536,563
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 89.31
Mean single sequence MFE -22.20
Consensus MFE -19.70
Energy contribution -20.32
Covariance contribution 0.62
Combinations/Pair 1.04
Mean z-score -2.25
Structure conservation index 0.89
SVM decision value 1.73
SVM RNA-class probability 0.974222
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536471 92 - 23771897
AGACUGAGGAGCCAAAGAAAUUCUGACUUUUCUCGAAGGGAACGUGAAAACAGUUUUUCGAUGUCUCCAAAGAUAUAUAUAUAUAUAUAAGU
...((..((((.((..((((..(((..(((((.((.......)).))))))))..))))..)).))))..))((((((....)))))).... ( -20.70)
>DroSim_CAF1 5505 92 - 1
AGACUGAGGAGCCAAAGAAAUUCUGACUUUUCUCGAAGGGAACGAGAAAACAGUUUUCCGAUGUCUCCAAAGAUAUAUGUAUAUAUAUACGU
...((..((((.((..((((..(((..((((((((.......))))))))))).))))...)).))))..))....((((((....)))))) ( -21.50)
>DroEre_CAF1 5735 91 - 1
AGACUGAGGAGCCAAAGAAAUUCUGACUUUUCUCGAAGGGAACGAGAA-ACAGUUUUUCGGUGUCUCCAAAGAUAUAUAUAUAUCUGCAUGU
.......((((.((..((((..(((...(((((((.......))))))-))))..))))..)).))))..((((((....))))))...... ( -26.00)
>DroYak_CAF1 5697 84 - 1
AGACUGAGGAGCCAAAGAAAUUCGGACUUUUCUCGAAGGGAACGAGAAAACCAUUUUUCGAUGUCUCCAAAGAUAUAUAUA--------CGU
...((..((((.((..((((...((..((((((((.......))))))))))...))))..)).))))..)).........--------... ( -20.60)
>consensus
AGACUGAGGAGCCAAAGAAAUUCUGACUUUUCUCGAAGGGAACGAGAAAACAGUUUUUCGAUGUCUCCAAAGAUAUAUAUAUAUAUAUACGU
...((..((((.((..((((..(((..((((((((.......)))))))))))..))))..)).))))..)).................... (-19.70 = -20.32 +   0.62)

alignment

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secondary structure

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dotplot

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Window 3

Location 7,536,489 – 7,536,603
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.61
Mean single sequence MFE -34.34
Consensus MFE -29.92
Energy contribution -30.52
Covariance contribution 0.60
Combinations/Pair 1.10
Mean z-score -2.44
Structure conservation index 0.87
SVM decision value 3.26
SVM RNA-class probability 0.998866
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536489 114 + 23771897
------AUCUUUGGAGACAUCGAAAAACUGUUUUCACGUUCCCUUCGAGAAAAGUCAGAAUUUCUUUGGCUCCUCAGUCUUGUCUGGGCUCUCGACGGAAUCGGUGCGUUUUCCAAAAUA
------...(((((((((((((((((....)))))..(((((..((((((..(((((((.....))))))).(((((......))))).)))))).))))).))))...))))))))... ( -34.30)
>DroSec_CAF1 5603 120 + 1
AUAUAAAUCUUUGGAGACAUCGGAAAACUGUUUGCUCGUUUCCUUCGAGAAAAGUCCGAAUUUCUUUGGCUCAUCAGUCUUGUCUGGGCUCUCGACGGAAUCGGUGCGUUUUCCAAAAUA
...........((....))..(((((((.((..((.((.((((.((((((...(((((.((......((((....))))..)).))))))))))).)))).)))))))))))))...... ( -34.40)
>DroSim_CAF1 5523 114 + 1
------AUCUUUGGAGACAUCGGAAAACUGUUUUCUCGUUCCCUUCGAGAAAAGUCAGAAUUUCUUUGGCUCCUCAGUCUUGUCUGGGCUCUCGACGGAAUCGGUGCGUUUUCCAAAAUA
------.....((....))..(((((((.((...((.(((((..((((((..(((((((.....))))))).(((((......))))).)))))).))))).)).)))))))))...... ( -36.30)
>DroEre_CAF1 5753 113 + 1
------AUCUUUGGAGACACCGAAAAACUGU-UUCUCGUUCCCUUCGAGAAAAGUCAGAAUUUCUUUGGCUCCUCAGUCUUUCCUGGCCUCUCGACGGAACCGGUGCGUUUUCCAAAAUA
------...((((((((((((((((.....)-)))..(((((..((((((..(((((((.....))))))).....(((......))).)))))).))))).))))...))))))))... ( -34.50)
>DroYak_CAF1 5707 114 + 1
------AUCUUUGGAGACAUCGAAAAAUGGUUUUCUCGUUCCCUUCGAGAAAAGUCCGAAUUUCUUUGGCUCCUCAGUCUUGCCUGGGCUCUCGACGGAAUCGGUGCGUUUUCCAAAAUA
------...((((((((((((((..(((((.....))))).((.((((((..((.(((((....))))))).(((((......))))).)))))).))..))))))...))))))))... ( -32.20)
>consensus
______AUCUUUGGAGACAUCGAAAAACUGUUUUCUCGUUCCCUUCGAGAAAAGUCAGAAUUUCUUUGGCUCCUCAGUCUUGUCUGGGCUCUCGACGGAAUCGGUGCGUUUUCCAAAAUA
.........(((((((((((((((((....)))))..(((((..((((((..(((((((.....))))))).(((((......))))).)))))).))))).))))...))))))))... (-29.92 = -30.52 +   0.60)

alignment

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secondary structure

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dotplot

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Window 4

Location 7,536,489 – 7,536,603
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.61
Mean single sequence MFE -32.72
Consensus MFE -23.92
Energy contribution -23.56
Covariance contribution -0.36
Combinations/Pair 1.08
Mean z-score -2.03
Structure conservation index 0.73
SVM decision value 0.14
SVM RNA-class probability 0.601703
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7536489 114 - 23771897
UAUUUUGGAAAACGCACCGAUUCCGUCGAGAGCCCAGACAAGACUGAGGAGCCAAAGAAAUUCUGACUUUUCUCGAAGGGAACGUGAAAACAGUUUUUCGAUGUCUCCAAAGAU------
..(((((((....(((.(((((((.((((((((((((......))).))((.((((....)).)).)).))))))).))))..((....))......))).))).)))))))..------ ( -28.40)
>DroSec_CAF1 5603 120 - 1
UAUUUUGGAAAACGCACCGAUUCCGUCGAGAGCCCAGACAAGACUGAUGAGCCAAAGAAAUUCGGACUUUUCUCGAAGGAAACGAGCAAACAGUUUUCCGAUGUCUCCAAAGAUUUAUAU
....(((((((((((..((.((((.(((((((..(((......)))..(((((.((....)).)).)))))))))).)))).)).)).....))))))))).((((....))))...... ( -30.50)
>DroSim_CAF1 5523 114 - 1
UAUUUUGGAAAACGCACCGAUUCCGUCGAGAGCCCAGACAAGACUGAGGAGCCAAAGAAAUUCUGACUUUUCUCGAAGGGAACGAGAAAACAGUUUUCCGAUGUCUCCAAAGAU------
....(((((((((...(((.((((.((((((((((((......))).))((.((((....)).)).)).))))))).)))).)).)......))))))))).((((....))))------ ( -28.00)
>DroEre_CAF1 5753 113 - 1
UAUUUUGGAAAACGCACCGGUUCCGUCGAGAGGCCAGGAAAGACUGAGGAGCCAAAGAAAUUCUGACUUUUCUCGAAGGGAACGAGAA-ACAGUUUUUCGGUGUCUCCAAAGAU------
..(((((((....((((((((((((((....)))(((......))).))))))...((((..(((...(((((((.......))))))-))))..))))))))).)))))))..------ ( -44.20)
>DroYak_CAF1 5707 114 - 1
UAUUUUGGAAAACGCACCGAUUCCGUCGAGAGCCCAGGCAAGACUGAGGAGCCAAAGAAAUUCGGACUUUUCUCGAAGGGAACGAGAAAACCAUUUUUCGAUGUCUCCAAAGAU------
..(((((((...........((((.((((((((((((......))).))((((.((....)).)).)).))))))).)))).(((((((....))))))).....)))))))..------ ( -32.50)
>consensus
UAUUUUGGAAAACGCACCGAUUCCGUCGAGAGCCCAGACAAGACUGAGGAGCCAAAGAAAUUCUGACUUUUCUCGAAGGGAACGAGAAAACAGUUUUUCGAUGUCUCCAAAGAU______
....(((((((((...(((.((((.(((((((..(((......)))..((((..((....))..).)))))))))).)))).)).)......))))))))).((((....))))...... (-23.92 = -23.56 +  -0.36)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:36 2006