Locus 2697

Sequence ID 3L_DroMel_CAF1
Location 7,535,178 – 7,535,276
Length 98
Max. P 0.551105
window4215

overview

Window 5

Location 7,535,178 – 7,535,276
Length 98
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.07
Mean single sequence MFE -27.05
Consensus MFE -21.08
Energy contribution -20.86
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.98
Structure conservation index 0.78
SVM decision value 0.03
SVM RNA-class probability 0.551105
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7535178 98 + 23771897
AGUGACAGCGCUUUUCAUGAGCCAAUAAAGUUGUCCAUGUCGCUUUGUCAUAUUCAUAUAUCAUGGC------------CGUACACCCGGCGACUUAUGUCACAUUCACA----------
.(((((((.((((.....)))))....((((((((..(((((((.((..(((....)))..)).)).------------)).)))...)))))))).)))))).......---------- ( -25.10)
>DroPse_CAF1 5876 104 + 1
AGUGACAGCGCUUUUCAUGAGCCAAUAAAGUUGUCCAUGUCGCUUUGUCAUAUUCAUAUAUCAUGGC-AAUGC-----UCGUACACCCGGCAACUUAUGUCACAUGGUCC----------
.(((((((.((((.....)))))....((((((((..(((.((.(((((((((......)).)))))-)).))-----....)))...)))))))).)))))).......---------- ( -28.80)
>DroGri_CAF1 6239 108 + 1
AGUGACAGCGCUUUUCAUGAGCCAAUAAAGUUGUCCAUGUCGCUUUGUCAUAUUCAUAUAUCAUUGC------------CAUACACCCGGCGACUUAUGUCACAUGUUCCACUCCGAUUU
.(((((((.((((.....)))))....((((((((..(((.((..((..(((....)))..))..))------------...)))...)))))))).))))))................. ( -24.00)
>DroMoj_CAF1 6911 108 + 1
AGUGACAGCGCUUUUCAUGAGCCAAUAAAGUUGUCCAUGUCGCUUUGUCAUAUUCAUAUAUCAUUGC------------CAUACACCCGGCGACUUAUGUCACAUGUUCCGCUCUGGCUC
((((....))))......((((((....(((.(..(((((.((...(((((((....))))....((------------(........))))))....)).)))))..).))).)))))) ( -26.00)
>DroAna_CAF1 4013 111 + 1
AGUGACAGAGCUUUUCAUGAGCCAAUAAAGUUGUCCAUGUCGCUUUGUCAUAUUCAUAUAUCAUGGCCAAUACUAGCAUCGUACACCCGGCGACUUAUGUCACAUGGUCGG---------
.((((((((((....((((.(.((((...)))).)))))..))))))))))........(((((((((..(((.......))).....)))(((....))).))))))...--------- ( -29.60)
>DroPer_CAF1 5911 104 + 1
AGUGACAGCGCUUUUCAUGAGCCAAUAAAGUUGUCCAUGUCGCUUUGUCAUAUUCAUAUAUCAUGGC-AAUGC-----UCGUACACCCGGCAACUUAUGUCACAUGGUCC----------
.(((((((.((((.....)))))....((((((((..(((.((.(((((((((......)).)))))-)).))-----....)))...)))))))).)))))).......---------- ( -28.80)
>consensus
AGUGACAGCGCUUUUCAUGAGCCAAUAAAGUUGUCCAUGUCGCUUUGUCAUAUUCAUAUAUCAUGGC____________CGUACACCCGGCGACUUAUGUCACAUGGUCC__________
.(((((((.((((.....)))))....((((((((..(((.((..((..(((....)))..))..))...............)))...)))))))).))))))................. (-21.08 = -20.86 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:28 2006