Locus 2696

Sequence ID 3L_DroMel_CAF1
Location 7,534,103 – 7,534,202
Length 99
Max. P 0.529666
window4214

overview

Window 4

Location 7,534,103 – 7,534,202
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -28.84
Consensus MFE -16.64
Energy contribution -16.33
Covariance contribution -0.31
Combinations/Pair 1.12
Mean z-score -1.85
Structure conservation index 0.58
SVM decision value -0.01
SVM RNA-class probability 0.529666
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7534103 99 - 23771897
ACUACCUUAACUAUGACUAUGGU----AAGUGUGCGCCCAACGCGCAUGACCUCAGCAAUUUCACUUCACUUGAA------GUGCAAACGCACAUGCAAACUGUGGGGC
..((((..............)))----).(((((((.....)))))))..(((((.((.(((((((((....)))------))).))).((....))....))))))). ( -25.94)
>DroPse_CAF1 4708 100 - 1
AGUACGGG----UCGUCGUAGGU----AAGUGUGCGCCCAACGCGCAUGACCUCAACAAUUUGGCUUCACUUGAAGC-CAAGUGCAAACGCACAUGCAAACACUUGGCC
..(((((.----...)))))(((----(((((((((.....)))(((((.........((((((((((....)))))-)))))((....)).)))))..)))))).))) ( -36.70)
>DroEre_CAF1 3345 99 - 1
ACUACCUUAACUAUGACUAUGGU----AAGUGUGCGCCCAACGCGCAUGACCUCAGCAAUUUCACUUCACUUGAA------GUGCAAACGCACAUGCAAACUGUGGAGC
.............((.((..(((----..(((((((.....))))))).)))..))))......(((((((((..------((((....))))...)))...)))))). ( -26.00)
>DroYak_CAF1 3317 99 - 1
ACUACCUUAACUAUGACUAUGGU----AAGUGUGCGCCCAACGCGCAUGACCUCAGCAAUUUCACUUCACUUGAA------GUGCAAACGCACAUGCAAACCGUGGAAC
................(((((((----..(((((((........((.((....))))..(((((((((....)))------))).))))))))))....)))))))... ( -28.50)
>DroAna_CAF1 2785 98 - 1
ACUAUGGA---AAUGGAAAUGGUAAGUAAGUGUGCGCCCAACGCGCAUGACCUCAACAAUUUGGCUUCAUUUGAA------GUGCAAACGCACAUGCAAACUCUGGA--
.((((...---.))))....(((..(((.((((((((.....)))).............(((((((((....)))------)).)))).)))).)))..))).....-- ( -22.50)
>DroPer_CAF1 4757 101 - 1
AGUACGGG----UCGUCGUAGGU----AAGUGUGCGCCCAACGCGCAUGACCUCAACAAUUUGGCUUCACUUGAAGCCCAAGUGCAAACGCACAUGCAAACACUUGGCC
......((----((((.(.((((----..(((((((.....))))))).))))).)).....((((((....))))))...((((....))))............)))) ( -33.40)
>consensus
ACUACCGU___UAUGACUAUGGU____AAGUGUGCGCCCAACGCGCAUGACCUCAACAAUUUCACUUCACUUGAA______GUGCAAACGCACAUGCAAACUCUGGACC
....((..............(((......(((((((.....))))))).))).............................((((....))))...........))... (-16.64 = -16.33 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:27 2006