Locus 2695

Sequence ID 3L_DroMel_CAF1
Location 7,533,895 – 7,533,991
Length 96
Max. P 0.974885
window4213

overview

Window 3

Location 7,533,895 – 7,533,991
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 91.80
Mean single sequence MFE -24.90
Consensus MFE -22.75
Energy contribution -22.83
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -1.81
Structure conservation index 0.91
SVM decision value 1.74
SVM RNA-class probability 0.974885
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7533895 96 + 23771897
UAUAAGAAAUACGCCCGCCUUUGGUCACGAACUCAACGCAACUGAGCACUGACCCAAAACAUUCGCUGCUAAAGUGAAGGGUCAGUUCGGCACUCG
............(((.((..(..((..((.......))..))..)))((((((((......((((((.....))))))))))))))..)))..... ( -26.90)
>DroPse_CAF1 4497 95 + 1
-AAAAAAAGUACGCCCGCCUUUGGUCACGAACUCCACGCAACUGAACACUGACCCAAAACAUUUGCUGCUAAAGUGAAGGGUCAGUACAGCACUCA
-...............((.((..((..((.......))..))..)).((((((((......((..((.....))..))))))))))...))..... ( -20.60)
>DroSec_CAF1 2999 96 + 1
UAUAAGAAAUACGCCCGCCUUUGGUCACGAACUCAACGCAACUGACCACUGACCCAAAACAUUCGCUGAUAAAGUGAAGGGUCAGUUCGGCACUCG
................(((...(((((((.......))....)))))((((((((......((((((.....))))))))))))))..)))..... ( -28.50)
>DroYak_CAF1 3093 96 + 1
UAUAAGCAAUACGCCCGCCUUUGGUCACGAACUCAACGCAACUGAGCACUGACCCAAAACAUUCGCUGCUAAAGUGAAGGGUCAGUUCGGCACUCG
.....((.....))..(((.(..((..((.......))..))..)(.((((((((......((((((.....)))))))))))))).))))..... ( -26.90)
>DroAna_CAF1 2590 95 + 1
AAU-AAAAAUACGCCCGCCUUUGGUCACGAACUCAACGCAACUGAGCACUGACCCAAAACAUUUGCUGGCCAAGUGAAGGGUCAGUUCGGCACUCA
...-........(((.((..(..((..((.......))..))..)))((((((((....((((((.....))))))..))))))))..)))..... ( -25.90)
>DroPer_CAF1 4546 95 + 1
-AAAAAAAGUACGCCCGCCUUUGGUCACGAACUCCACGCAACUGAACACUGACCCAAAACAUUUGCUGCUAAAGUGAAGGGUCAGUACAGCACUCA
-...............((.((..((..((.......))..))..)).((((((((......((..((.....))..))))))))))...))..... ( -20.60)
>consensus
UAUAAAAAAUACGCCCGCCUUUGGUCACGAACUCAACGCAACUGAGCACUGACCCAAAACAUUCGCUGCUAAAGUGAAGGGUCAGUUCGGCACUCA
................(((((..((..((.......))..))..)).((((((((......((((((.....))))))))))))))..)))..... (-22.75 = -22.83 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:26 2006