Locus 2692

Sequence ID 3L_DroMel_CAF1
Location 7,523,581 – 7,523,681
Length 100
Max. P 0.756147
window4208

overview

Window 8

Location 7,523,581 – 7,523,681
Length 100
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 86.14
Mean single sequence MFE -30.18
Consensus MFE -21.09
Energy contribution -21.15
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.91
Structure conservation index 0.70
SVM decision value 0.49
SVM RNA-class probability 0.756147
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7523581 100 - 23771897
UGGGUUUUGGGUCUGGGUCUUACCACGACUGGAUGGAUGGAUGUACAUAUGUACAUGCAUAAGAAGUAAGAGGUACGGGGCCCGAGGUCCGAGUUAAGUG------
.....(((((..((((((((((((...(((......(((.((((((....)))))).)))....)))....))))..)))))).))..))))).......------ ( -35.70)
>DroSec_CAF1 176343 96 - 1
UGGGUUUUGGGUCUGGGUCUUACCACCACUGGAU----GGAUGUACAUCUGU------AUAAGAAGUAAGAGGUACGGGGCCCGAGGUCCGAGUUAAGUGGUAAGU
.((..(((((((((.(.((((((..(((.....)----)).(((((....))------)))....))))))....).)))))))))..))................ ( -30.70)
>DroSim_CAF1 168118 96 - 1
UGGGUUUUGGGUCUGGGUCUUACCACCACUGGAU----GGAUGUACAUUUGU------AUAAGAAGUAAGAGGUACGGGGCCCGAGGUCCGAGUUAAGUGGUAAGU
.((..(((((((((.(.((((((..(((.....)----)).(((((....))------)))....))))))....).)))))))))..))................ ( -30.70)
>DroYak_CAF1 170021 94 - 1
UGGGUUUUGGGUCUGGGUCUUACUGCCACUGGAU----GUACGAACAU--GU------AUGAGAAGUAAAAGGUACGGGGUCCGAGGUCCGAGUUAAGUGGUAAGU
.((..(((((..((.(..((((((.(((.((.((----((....))))--.)------))).).))))...))..).))..)))))..))................ ( -23.60)
>consensus
UGGGUUUUGGGUCUGGGUCUUACCACCACUGGAU____GGAUGUACAU_UGU______AUAAGAAGUAAGAGGUACGGGGCCCGAGGUCCGAGUUAAGUGGUAAGU
.((..(((((((((.(.((((((..(.....)......(......)...................))))))....).)))))))))..))................ (-21.09 = -21.15 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:22 2006