Locus 2691

Sequence ID 3L_DroMel_CAF1
Location 7,522,640 – 7,522,741
Length 101
Max. P 0.568534
window4207

overview

Window 7

Location 7,522,640 – 7,522,741
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 75.95
Mean single sequence MFE -18.82
Consensus MFE -10.54
Energy contribution -10.74
Covariance contribution 0.20
Combinations/Pair 1.10
Mean z-score -1.68
Structure conservation index 0.56
SVM decision value 0.07
SVM RNA-class probability 0.568534
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7522640 101 + 23771897
AAAAAUUAAAAAAAAACAAAAACAACUGAAAUUGU-CUGCCGGUUUGGCAUUUAACAAAAUGCCGCGCUUAGUGCGUAAAAUUUCAUUUUAUAGCACAAGGC
...................................-..((((((.((((((((....)))))))).)))..(((((((((((...))))))).))))..))) ( -22.30)
>DroSec_CAF1 175412 99 + 1
AAAAAUUGAAAAAAAA--ACAACAACUGAAAUUGU-CUGCCGGUUUGGCAUUUAACAAAAUGCCGCGCUUAGUGCGUAAAAUUUCAUUUUAUAGCACAAGAC
................--...............((-((...(((.((((((((....)))))))).)))..(((((((((((...))))))).)))).)))) ( -20.90)
>DroEre_CAF1 173513 81 + 1
AA-------AAAUAA--------AACAGAAAUUGU-CUGCCGGUUUCGUAUU-----AAUUGCCGCGCUUAGUGCGUAAAAUUUCAUUUUAUAGCACAAGGC
..-------......--------..((((.....)-))).((((........-----....)))).((((.(((((((((((...))))))).)))).)))) ( -16.10)
>DroYak_CAF1 169150 88 + 1
AAAAAAUGAAAAUAA--------AACUGAAAUUGU-CUGCCGGUUUUGUAUU-----AAUUGCCGCGCUUAGUGCGUAAAAUUUCAUUUUAUAGCACAAGGC
..(((((((((((((--------(((((.......-....)))))))))...-----.......((((.....))))....)))))))))............ ( -18.00)
>DroAna_CAF1 195375 89 + 1
CAGAAACCUCAACUA--------CCCUGGACCUCUUUUAGCCAAGUCGUGUU-----AAAUGCCGCGCUUAGUGCGUAAAAUUUUAUUUUAUAGCACAAGGC
......((.......--------....))..........((((((.((((..-----......))))))).(((((((((((...))))))).))))..))) ( -16.80)
>consensus
AAAAAAUGAAAAAAA________AACUGAAAUUGU_CUGCCGGUUUCGUAUU_____AAAUGCCGCGCUUAGUGCGUAAAAUUUCAUUUUAUAGCACAAGGC
...............................................(((((......)))))...((((.(((((((((((...))))))).)))).)))) (-10.54 = -10.74 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:21 2006