Locus 2690

Sequence ID 3L_DroMel_CAF1
Location 7,520,274 – 7,520,367
Length 93
Max. P 0.513025
window4206

overview

Window 6

Location 7,520,274 – 7,520,367
Length 93
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 81.44
Mean single sequence MFE -25.32
Consensus MFE -15.83
Energy contribution -16.33
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.63
SVM decision value -0.04
SVM RNA-class probability 0.513025
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7520274 93 - 23771897
CUGCAAACUUAAUUGGGGC-CCAGUUUGUCGCACAUUCUGGGUGGCCC-----GGGUACAGUGGUCG-CCAAUUAAAGGAAAUCCAGUAACUUUAUAUUU
.(((....((((((((.((-((((..((.....))..))))))(((((-----.......).)))).-)))))))).((....)).)))........... ( -27.80)
>DroSec_CAF1 173021 94 - 1
CUGCAAACUUAAUUGGGGCCCCAGUUUGUCGCACAUUCUGGGUGGCCC-----GGGUACAGUGGCCA-CCAAUAAAAGGAAACCCAGUAACUUUAAAUUA
...........((((((.((.(((..((.....))..)))((((((((-----.......).)))))-)).......))...))))))............ ( -29.70)
>DroSim_CAF1 164789 94 - 1
CUGCAAACUUAAUUGGGGCCCCAGUUUGUCGCACAUUCUGGGUGGCCC-----GUGUACAGUGGUCG-CCAAUUAAAGGAAACCUAGUAACUUUAAAUUA
.(((..(((....((((.((((((..((.....))..))))).).)))-----).....)))(((..-((.......))..)))..)))........... ( -26.50)
>DroEre_CAF1 171258 92 - 1
CUGCAAACUUAAUUGGGGC-CCAGUUUGUCGCACAUUCUGGGUGGCCC-----GGGUACAGUGGUCG-CCAAU-AAAUAAAACCCAGUAACUUUUAAUUU
...........((((((((-((((..((.....))..))))))(((((-----.......).)))).-.....-........))))))............ ( -25.50)
>DroYak_CAF1 166976 78 - 1
CUGCAAACUUAAUUGGGGC-CCAGUUUGUCGCACAUUCUGGGUGGCCC-----UCGUACAGUGGUCA-ACAAU---------------AACUUUACAUUU
...........((((..((-((((..((.....))..))))))(((((-----(.....)).)))).-.))))---------------............ ( -19.20)
>DroAna_CAF1 192780 84 - 1
CUGCAAACUUAAUUGGGGC-CCAGUUUGUCGCACAUUCUGGGUGGCCCUUGCAGGGUACAGUGGUUUAAAGAU---------------UAAUUAAAAUUU
((..(((((..((((..((-((((..((.....))..)))))).((((.....)))).)))))))))..))..---------------............ ( -23.20)
>consensus
CUGCAAACUUAAUUGGGGC_CCAGUUUGUCGCACAUUCUGGGUGGCCC_____GGGUACAGUGGUCG_CCAAU_AAAGGAAACCCAGUAACUUUAAAUUU
(..(..((((.....((((.((((..((.....))..))))...)))).....))))...)..).................................... (-15.83 = -16.33 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:20 2006