Locus 269

Sequence ID 3L_DroMel_CAF1
Location 767,970 – 768,063
Length 93
Max. P 0.638137
window402

overview

Window 2

Location 767,970 – 768,063
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 86.56
Mean single sequence MFE -29.23
Consensus MFE -17.66
Energy contribution -18.27
Covariance contribution 0.61
Combinations/Pair 1.10
Mean z-score -4.01
Structure conservation index 0.60
SVM decision value 0.22
SVM RNA-class probability 0.638137
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 767970 93 + 23771897
--AGAUGCGACGCUAUCUC-AUGUGGCCGUUGGCCGCUACGAUAGCGCGCAAAUCAGGUGCAUAACACCUGAGCAAAUUAAACACACAAACAAAAA
--...((((.(((((((..-..((((((...))))))...)))))))))))..(((((((.....)))))))........................ ( -37.30)
>DroPse_CAF1 134669 84 + 1
--GGAU-CGGCUCUAUC------UGCUCGUUGGCCGCU-CGAUAGCGCACAAAUCAGGUGCAUAACACCUGAGCAAAUUAAAC--AAAAACAAAAA
--....-..((.(((((------.((.........)).-.))))).)).....(((((((.....)))))))...........--........... ( -19.00)
>DroEre_CAF1 128969 93 + 1
--AGAUGCGACGCUAUCUC-AUGUGGCCGUUGGCCGCUACGAUAGCGCGCAAAUCAGGUGCAUAACACCUGAGCAAAUUAAACACACAAACAAAAA
--...((((.(((((((..-..((((((...))))))...)))))))))))..(((((((.....)))))))........................ ( -37.30)
>DroYak_CAF1 130287 93 + 1
--AGAUGCGACGCUAUCUC-AUGUGGCCGUUGGCCGCUACGAUAGCGCGCAAAUCAGGUGCAUAACACCUGAGCAAAUUAAACACACAAACAAAAA
--...((((.(((((((..-..((((((...))))))...)))))))))))..(((((((.....)))))))........................ ( -37.30)
>DroAna_CAF1 142793 93 + 1
--AGAUGCGACCCUAUCUCUAUCUGGCAGUCGGACGGU-CGAUAGCGCGCAAAUCAGGUGCAUAACACCUGAACAAAUUAAGCGCACCAACAAAAA
--...((((.(.(((((.(..((((.....))))..).-.))))).)))))..(((((((.....)))))))........................ ( -25.50)
>DroPer_CAF1 140374 86 + 1
UCGGAU-CGGCUCUAUC------UGCUCGUUGGCCGCU-CGAUAGCGCACAAAUCAGGUGCAUAACACCUGAGCAAAUUAAAC--AAAAACAAAAA
......-..((.(((((------.((.........)).-.))))).)).....(((((((.....)))))))...........--........... ( -19.00)
>consensus
__AGAUGCGACGCUAUCUC_AUGUGGCCGUUGGCCGCU_CGAUAGCGCGCAAAUCAGGUGCAUAACACCUGAGCAAAUUAAACACACAAACAAAAA
.....((((.(.(((((.....(((.(.....).)))...))))).)))))..(((((((.....)))))))........................ (-17.66 = -18.27 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:54 2006