Locus 2689

Sequence ID 3L_DroMel_CAF1
Location 7,514,855 – 7,514,963
Length 108
Max. P 0.540968
window4205

overview

Window 5

Location 7,514,855 – 7,514,963
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.57
Mean single sequence MFE -32.07
Consensus MFE -20.32
Energy contribution -21.65
Covariance contribution 1.33
Combinations/Pair 1.26
Mean z-score -1.38
Structure conservation index 0.63
SVM decision value 0.01
SVM RNA-class probability 0.540968
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7514855 108 - 23771897
ACC------------CGGAAAUAUAUCCACUAACCCCGCCAUAAAUGCUCUGGAGGCACAGGACUACCUGCCAACUCGAAUUGUGAACGGCAAGAAGAUCAAAUGCUCCAGGGCACCAUA
...------------.(((......))).................((((((((((.((...((((.(.((((...(((.....)))..)))).).)).))...))))))))))))..... ( -29.10)
>DroPse_CAF1 169713 120 - 1
GCCGCUCUCUUAUUUUGGCAACAUCUCUAGCAACCCGGGCGUGAAUGCGCUGGAGACCCUGGACUAUCUGCCCACCAGAAUUGUGAAUGGCAAGAGGAUCAAGUGCUCGAGGGCGCCCUA
((((.((.(..(((((((.....((((((((..(....).((....))))))))))...(((.(.....).)))))))))).).)).))))...(((.....(((((....)))))))). ( -34.40)
>DroSec_CAF1 167564 108 - 1
ACC------------CGGAAAUAUAUCCACUAACCCCGCCAUAAAUGCUCUGGAGGCACAGGACUACCUGCCAACUCGAAUAGUGAACGGCAAGAAGAUCAAGUGCUCCAGGGCACCAUA
...------------.(((......))).................((((((((((.(((..((((.(.((((.(((.....)))....)))).).)).))..)))))))))))))..... ( -32.90)
>DroEre_CAF1 165186 108 - 1
GCC------------UGGAAAUAUAUCCACUAACCCCGCCAUAAAUGCUCUGGAAGCACAGGACCACCUGCCCACUCGAAUUGUGAACGGCAAGAGGAUCAAGUGCACCAGAGCCCCAUA
...------------((((......)))).................(((((((..((((..((((.(.(((((((.......)))...)))).).)).))..)))).)))))))...... ( -32.70)
>DroYak_CAF1 161445 108 - 1
GCC------------UGGAAAUAUAUCCACUAACCCCGCCAUAAAUGCAUUGGAUGCACAGGACUAUCUGCCCACUCGAAUUGUGAACGGCAAGAAGAUCAAGUGCACCAGAGCCCCAUA
...------------((((......)))).................((.((((.(((((..((((.(((((((((.......)))...))).))))).))..))))))))).))...... ( -26.50)
>DroPer_CAF1 170252 120 - 1
GCCGCUCUCCCAUUUUGGCAACAUCUCUAGCAACCCGGGCGUGAAUGCCCUGGAGACCCUGGACUAUCUGCCCACCAGAAUUGUGAAUGGCAAGAGGAUCAAGUGCUCGAGGGCGCCCUA
..((((((((((((..((((.....(((((...((.(((((....))))).)).....))))).....))))(((.......))))))))...(((.((...)).))))))))))..... ( -36.80)
>consensus
GCC____________UGGAAAUAUAUCCACUAACCCCGCCAUAAAUGCUCUGGAGGCACAGGACUACCUGCCCACUCGAAUUGUGAACGGCAAGAAGAUCAAGUGCUCCAGGGCACCAUA
................(((......)))..................(((((((((.(((..((((.(.(((((((.......)))...)))).).)).))..))))))))))))...... (-20.32 = -21.65 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:19 2006