Locus 2687

Sequence ID 3L_DroMel_CAF1
Location 7,502,269 – 7,502,374
Length 105
Max. P 0.609376
window4202

overview

Window 2

Location 7,502,269 – 7,502,374
Length 105
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 78.98
Mean single sequence MFE -23.26
Consensus MFE -11.03
Energy contribution -13.95
Covariance contribution 2.92
Combinations/Pair 1.15
Mean z-score -1.97
Structure conservation index 0.47
SVM decision value 0.15
SVM RNA-class probability 0.609376
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7502269 105 - 23771897
UACUCGAUGAU-AUCGAUAGCUGUGACAAAUCACCUAUCGAUAUCACUUGCAUUCUCAAACUUACCAAACUGUGGUGAAUUUGCUUGCGUGAAAGUGAUAACUUUA
(((....((((-((((((((..((((....))))))))))))))))...(((....((((.((((((.....)))))).))))..))))))(((((....))))). ( -32.30)
>DroSec_CAF1 154990 95 - 1
UA----------AUCCAGAACUGUAACACAUCACCUAUCGAUAUUACUUGCC-UCUCAAACUUACCAAAGUGUGGUGAAUUUGCAUGCGUGAAAGUGAUAACGUUA
..----------..........................((.(((((((((((-...((((.((((((.....)))))).))))...).))..)))))))).))... ( -15.60)
>DroSim_CAF1 147045 95 - 1
UA----------AUCCAGAACUGUGACACAUCACCUAUCGAUAUCACUCGCC-UCUCAAACUUACCAAAAUGUGGUGAAUUUGCUUGCGUGAAAGUGAUAACGUUA
..----------..........((((....))))....((.(((((((((((-...((((.((((((.....)))))).))))...).))))..)))))).))... ( -21.10)
>DroEre_CAF1 152562 104 - 1
UA-UCGAUGAUAAUCGAUAACUUCCACACAUCACUUAUCGAUUGCACUUCCCUUUCU-AACUUACCAAAUUGUGGUGAAUUUUCUUGGGUGAAAGUGAUAACGUUA
((-(((((....)))))))..........(((((((.(((.........(((.....-((.((((((.....)))))).)).....)))))))))))))....... ( -22.30)
>DroYak_CAF1 148557 105 - 1
CA-UCGAUGGUAAUCGGUAGUUCGCACAUAUCAGUUAUCGAUUUCUCUAGCCUUCUUAAACUUACCAAACUGUGGUGAAUUUUUUUGGGUGAAAGUGAUAACGUUA
.(-(((((....))))))...............(((((((.((((....((((....(((.((((((.....)))))).)))....)))))))).))))))).... ( -25.00)
>consensus
UA_UCGAUG_U_AUCGAUAACUGUCACACAUCACCUAUCGAUAUCACUUGCCUUCUCAAACUUACCAAACUGUGGUGAAUUUGCUUGCGUGAAAGUGAUAACGUUA
.............(((((((.((........)).)))))))((((((((.......((((.((((((.....)))))).)))).........))))))))...... (-11.03 = -13.95 +   2.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:16 2006