Locus 2686

Sequence ID 3L_DroMel_CAF1
Location 7,500,313 – 7,500,404
Length 91
Max. P 0.600434
window4201

overview

Window 1

Location 7,500,313 – 7,500,404
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 69.81
Mean single sequence MFE -30.67
Consensus MFE -14.02
Energy contribution -15.13
Covariance contribution 1.11
Combinations/Pair 1.38
Mean z-score -1.62
Structure conservation index 0.46
SVM decision value 0.13
SVM RNA-class probability 0.600434
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7500313 91 - 23771897
GCGGUGGCGGCGUUGUGGUGGCCAGCAGAAGUGGUGGUGGUAGUGGCGAUAUCACCGGAUUGACCAAAUCGGUGCUAAUGAGCACUGGAUU------
.((((((...(((..(..(.((((.((....)).)))).)..)..)))...))))))...........((((((((....))))))))...------ ( -34.10)
>DroPse_CAF1 151643 79 - 1
GCCAAGGCGUGGUGGUGGUGGUGAGUAGAGGCGGC------------------AGGGGACCCACCGCCGUGGUGCCAAUAAUCACUGGAUUGAUCAG
((....))..((((((..(((((......(((((.------------------.((....)).)))))....)))))...))))))........... ( -27.10)
>DroSec_CAF1 153061 91 - 1
GCGGUGGCGGUGUUGUGGUUGCAAGCAGAAGUGGUGGUGGUAGUGGCGAUAUCACCGGAUUGACCAAAUCGGUGCUAAUGAGCACUGGAUU------
..(((.((((((.(((.((..(.(.((..........)).).)..)).))).)))))...).)))...((((((((....))))))))...------ ( -29.10)
>DroSim_CAF1 145038 91 - 1
GCGGUGGCGGCGUUGUGGUUGCCAGCAGAAGUGGUGGUGGUAGUGGCGAUAUCACCGGAUUGACCAAAUCGGUGCUAAUGAGCACUGGAUU------
.((((((...(((..(..(..(((.((....)).)))..)..)..)))...))))))...........((((((((....))))))))...------ ( -35.10)
>DroEre_CAF1 150551 91 - 1
GUGAUGGCGGCGUAGUGGUGGUCAGCAGAAGUGGUGUUGGUAGUGGCGAUAUCACCGGAUUGACCAAUGCGGUGCUAAUGAGCACUGGAUU------
(((.(((((.((((....((((((((....(((((((((.......)))))))))..).))))))).)))).))))).....)))......------ ( -31.50)
>DroPer_CAF1 152314 79 - 1
GCCAAGGCGUGGUGGUGGUGGUGAGUAGAGGCGGC------------------AGGGGACCCACCGCCGUGGUGCCAAUAAUCACUGGAUUGAUCAG
((....))..((((((..(((((......(((((.------------------.((....)).)))))....)))))...))))))........... ( -27.10)
>consensus
GCGAUGGCGGCGUUGUGGUGGCCAGCAGAAGUGGUGGUGGUAGUGGCGAUAUCACCGGAUUGACCAAAGCGGUGCUAAUGAGCACUGGAUU______
((..(((((.((...((((((...((....))(((((((..........)))))))....))))))...)).)))))....)).............. (-14.02 = -15.13 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:15 2006