Locus 2685

Sequence ID 3L_DroMel_CAF1
Location 7,488,692 – 7,488,782
Length 90
Max. P 0.723709
window4200

overview

Window 0

Location 7,488,692 – 7,488,782
Length 90
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 82.32
Mean single sequence MFE -38.82
Consensus MFE -32.53
Energy contribution -32.87
Covariance contribution 0.34
Combinations/Pair 1.17
Mean z-score -1.58
Structure conservation index 0.84
SVM decision value 0.41
SVM RNA-class probability 0.723709
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7488692 90 + 23771897
ACCGGCAGCCUGGGCGCAGGC------------GCAGACCCAAACA---ACUCAUAUACCAAGUGCCCACGUUGGUGCUGGCAGUACCAAUGGGGCCGGAGUCGG
.(((((.(((((....)))))------------.............---.........((..(.((((.(((((((((.....)))))))))))))))).))))) ( -38.10)
>DroSec_CAF1 141691 90 + 1
ACCGGCAGCCUGGGCUCAGGC------------GCAGACCCAAACC---ACUCAUAUUCCAAGUGCCCACGUUGGUGCUGGCAGUACCAAUGGGGCCGGAGUCGG
.(((((.(((((....)))))------------.............---........(((..(.((((.(((((((((.....)))))))))))))))))))))) ( -39.20)
>DroSim_CAF1 133748 90 + 1
ACCGGCAGCCUGGGCGCAGGC------------GCAGACCCAAACC---ACUCAUAUUCCAAGUGCCCACGUUGGUGCUGGCAGUACCAAUGGGGCCGGAGUCGG
.(((((.(((((....)))))------------.............---........(((..(.((((.(((((((((.....)))))))))))))))))))))) ( -39.40)
>DroEre_CAF1 138991 90 + 1
ACCGGCAGCCUGGGCGCAGGC------------GCAGACCCAAACC---ACUCAUGUUCAAGCUGCCCACGUUGGUGCUGGCAGCACCAAUGGGGCCAGAGUCGG
.(((((.(((((....)))))------------.............---.............((((((.(((((((((.....)))))))))))).))).))))) ( -40.20)
>DroYak_CAF1 134814 90 + 1
ACCGGCAGCCUGGGCGCAGGC------------GCAGACCCAAACC---ACUCAUGUUCAAGCUGCCCACGUUGGUGCUGGCAGCACCAAUGGGGCCGGAGUCGG
.(((((.(((((....)))))------------((((.....(((.---......)))....))))((.(((((((((.....))))))))))))))))...... ( -40.80)
>DroAna_CAF1 134357 96 + 1
GCCAGCAGCCUGGGCUCAGGCGUUUUUGCAUUCGCAGACGCAGACCCCGACUUUGAUU---------CACGUUGGUGGUGGCAGCACCAGCGGGGCCUUGUCCGG
.........((((((..((((((.(((((....))))).))....(((((.......)---------)..(((((((.......)))))))))))))).)))))) ( -35.20)
>consensus
ACCGGCAGCCUGGGCGCAGGC____________GCAGACCCAAACC___ACUCAUAUUCCAAGUGCCCACGUUGGUGCUGGCAGCACCAAUGGGGCCGGAGUCGG
.(((((.(((((....)))))...........................................((((.(((((((((.....)))))))))))))....))))) (-32.53 = -32.87 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:14 2006