| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,481,421 – 7,481,530 |
| Length | 109 |
| Max. P | 0.515495 |
| Location | 7,481,421 – 7,481,530 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -10.22 |
| Energy contribution | -10.17 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.48 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7481421 109 + 23771897 GUCCAUUAUGGUCCUUAUGAAAUUCGGCACAUAAAUUGUAUUAUUGCAUUUAUGCUUGAUUUUAUUUCGC--AGCCCAACUUUCGACUCUGCUUUUCUUUGCUGAUUGUGU----- ......((..(((...((((((((.((((..(((((.(((....)))))))))))).))))))))...((--((..............))))...........)))..)).----- ( -17.54) >DroPse_CAF1 129057 91 + 1 GUCCAUUAUGGUCCUUAUGAAAUUUGGCACAUAAAUUGUAUUAUUGCAUUUAUGCUUGAUUUUAUUUC------------------CUUUGCUUUUGUGUGGGAA--GUGU----- (.((.....)).).....((((((.((((..(((((.(((....)))))))))))).))))))(((((------------------((.(((....))).)))))--))..----- ( -18.50) >DroGri_CAF1 121171 104 + 1 GUCCAUUAUGGCUCUUAUGAAAUUUGGCACAUAAAUUGUAUUAUUGCAUUUAUGCUUGAUUUUAUUUCCGUUUGCCUCACAAUCG------------UCAUGUGAUUGUGUGGGUG .......((((.....((((((((.((((..(((((.(((....)))))))))))).))))))))..))))..((((((((((((------------.....)))))))).)))). ( -26.40) >DroWil_CAF1 161688 101 + 1 GUCCAUUAUGGUUCUUAUGAAAUUUGGCCCAUAAAUUGUAUUAUGGCAUUUAUGCUUGAUUUUAUUUCCG----------UUUUGCCUCACAAUCGUCAAGAUGAUUGUGU----- ...((..((((.....((((((((.(((((((((......)))))).......))).))))))))..)))----------)..))...(((((((((....))))))))).----- ( -25.41) >DroAna_CAF1 127261 107 + 1 GUCCAUUAUGGUCCUCAUGAAAUUUGGCACAUAAAUUGUAUUAUUGCAUUUAUGCUUGAUUUUAUUUCCC--UG----GCUAUCGGCCCUGCUUUUCUUAGCCGAUUGUGUGC--- ...(((.(..(((...((((((((.((((..(((((.(((....)))))))))))).)))))))).....--.(----((((..(((...))).....))))))))..)))).--- ( -22.50) >DroPer_CAF1 129652 91 + 1 GUCCAUUAUGGUCCUUAUGAAAUUUGGCACAUAAAUUGUAUUAUUGCAUUUAUGCUUGAUUUUAUUUC------------------CUUUGCUUUUGUGUGGGAA--GUGU----- (.((.....)).).....((((((.((((..(((((.(((....)))))))))))).))))))(((((------------------((.(((....))).)))))--))..----- ( -18.50) >consensus GUCCAUUAUGGUCCUUAUGAAAUUUGGCACAUAAAUUGUAUUAUUGCAUUUAUGCUUGAUUUUAUUUCC___________U_UCG_CUCUGCUUUUCUGAGGUGAUUGUGU_____ (.((.....)).)...((((((((.(((..((((((.(((....)))))))))))).))))))))................................................... (-10.22 = -10.17 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:11 2006