| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,478,524 – 7,478,621 |
| Length | 97 |
| Max. P | 0.859374 |
| Location | 7,478,524 – 7,478,621 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.15 |
| Mean single sequence MFE | -28.81 |
| Consensus MFE | -18.16 |
| Energy contribution | -19.64 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7478524 97 - 23771897 CCGC-CACUUGAGUGCUAAAAGGCGCAAUGAUAAAAUAUUUGCCCGA------CCAGGGCUAGUAAAUUUGUUGGCUGAAAAGUUGAAACAGCUAACAAAAUGC---- ....-.......(((((....)))))..........((((.((((..------...)))).))))..(((((((((((...........)))))))))))....---- ( -28.40) >DroPse_CAF1 125779 106 - 1 CCGC-CACUUGAGUGCUAAAAGGCGCAAUGAUAAAAUAUUUGCCUGGCCCGGGCCAAGGCAAGUAAAU-UGUUGGCUCAAAAGUUGAAACAGCCAACAAAAACUCCGG (((.-.......(((((....)))))..........((((((((((((....))).)))))))))..(-((((((((.............)))))))))......))) ( -36.52) >DroEre_CAF1 128832 99 - 1 CCGC-CACUUGAGUGCUAAAAGGCGCAAUGAUAAAAUAUUUGCCCGA------GCAGGGCUAGUAAAUUUGUUGGCUGAAAAGUUGAAACAGCUAACAAAAAACGC-- ....-.......(((((....)))))..........((((.((((..------...)))).))))..(((((((((((...........)))))))))))......-- ( -28.40) >DroWil_CAF1 156456 97 - 1 -ACC-CACUUGAGUGCAAAAAGGCGCAAUGAUAAAAUAUUUGCCCGA----GACCAAGGCAACUAAAU-UGUUGGCU-AAAAGUUGAAAAG---AAGAAACACUAAAA -...-......((((......((.((((...........))))))..----.....((.((((.....-.)))).))-.............---......)))).... ( -15.40) >DroAna_CAF1 124403 96 - 1 CCGC-CACUUGAGUGCUAAAAGGCGCAAUGAUAAAAUAUUUU-CCGU------CCGUGGCAAGUAAAUUUGUUGGCUGAAAAGUUGCAACAGCUAACAAAAUGC---- ..((-(((....(((((....)))))...(((..((....))-..))------).))))).......(((((((((((...........)))))))))))....---- ( -27.60) >DroPer_CAF1 126430 107 - 1 CCGCCCACUUGAGUGCUAAAAGGCGCAAUGAUAAAAUAUUUGCCUGGCCCGGGCCAAGGCAAGUAAAU-UGUUGGCUCAAAAGUUGAAACAGCCAACAAAAACUCCGG (((.........(((((....)))))..........((((((((((((....))).)))))))))..(-((((((((.............)))))))))......))) ( -36.52) >consensus CCGC_CACUUGAGUGCUAAAAGGCGCAAUGAUAAAAUAUUUGCCCGA______CCAAGGCAAGUAAAU_UGUUGGCUGAAAAGUUGAAACAGCUAACAAAAACC_C__ ............(((((....)))))..........(((((((((...........)))))))))....((((((((.............)))))))).......... (-18.16 = -19.64 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:10 2006