Locus 2681

Sequence ID 3L_DroMel_CAF1
Location 7,477,673 – 7,477,787
Length 114
Max. P 0.870650
window4195

overview

Window 5

Location 7,477,673 – 7,477,787
Length 114
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 68.87
Mean single sequence MFE -24.03
Consensus MFE -10.54
Energy contribution -10.87
Covariance contribution 0.33
Combinations/Pair 1.52
Mean z-score -1.91
Structure conservation index 0.44
SVM decision value 0.87
SVM RNA-class probability 0.870650
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7477673 114 - 23771897
----ACGAGAGAUACAAGAGAAUUAAGAGAGCUCAUUUUUUUUA-UUUCUCUUCAUUUCAUUGUUUAUGCGAUUGCAUGCUUAUUUAAAAAAUUGCAAAUUAAUCAAAUCGUUUUAACU
----(((((((((..(((((((.((((((((.....))))))))-.))))))).)))))........(((((((................)))))))...........))))....... ( -22.19)
>DroSec_CAF1 126262 115 - 1
----AGGAGAGAUACAAGAGAGUUAAGAAAGCUUACUCUUUGUGUUUUCUCUUCAUUUCAUUGUAUAUGCGAUUGCAUGAUUCUUUUAAAAAUUGCAACAGAAUCAAAUGAUAUUAACU
----.(((((((.((((((((((.(((....)))))))))).)))..)))))))...(((((....((((....))))((((((...............)))))).)))))........ ( -28.26)
>DroSim_CAF1 123208 115 - 1
----ACGAGAGAAACAAGAGAGUUAAGAAAGCUUACUCUUUGUGUUUUCUCUUCAUUUUAUUGUAUAUGCGAUUGCAUGCUUCUUUAAAAAAUUGCAACAGAAUCAAAUGAUUUUAACU
----..(((((((...(((((((.(((....))))))))))...))))))).((((((.(((.(...(((((((................)))))))..).))).))))))........ ( -26.19)
>DroEre_CAF1 128003 107 - 1
UUAGAAAAGAGAAA---AAUGCUUAAGAGAACGUAGUUCUUGCGCUUUCUCUUUAUGUUAUACUAUAUGUGAUUUCAUGUUUAUUUAAAGAAUUGCAGCAGAAUGAAUGC---------
.....(((((((((---...((....((((((...))))))..)))))))))))...((((.((...((..((((..((......))..))))..))..)).))))....--------- ( -19.40)
>DroYak_CAF1 123822 102 - 1
---GUGUAGAGAUA---AAAAGUUAAGAGAAUGUGCUUUC----CAUUCUCUUUGU-UUAUAGUCU-CGCGAUUGCAUGCUUAUUUAAAGAAUAG-----GAUUCAAUGGAUUUCUACU
---..((((((((.---..(((..(((((((((.......----)))))))))..)-)).......-..(.((((.((.(((((((...))))))-----))).)))).))))))))). ( -24.10)
>consensus
____ACGAGAGAUACAAGAGAGUUAAGAGAGCUUACUUUUUGUGCUUUCUCUUCAUUUUAUUGUAUAUGCGAUUGCAUGCUUAUUUAAAAAAUUGCAACAGAAUCAAAUGAUUUUAACU
.....(((((((....(((((((...........)))))))......))))))).............(((((((................)))))))...................... (-10.54 = -10.87 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:09 2006