| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,470,796 – 7,470,903 |
| Length | 107 |
| Max. P | 0.559151 |
| Location | 7,470,796 – 7,470,903 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.77 |
| Mean single sequence MFE | -23.46 |
| Consensus MFE | -13.86 |
| Energy contribution | -13.92 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7470796 107 + 23771897 UCCGC---G----CGCACAGAAAGAUUUUCCGCAUUAAUUU-UGCAUAUUAAAAAUGCAAUUUGUUGCGUUAAUUGCAGCAUGUGAAAUGUAUCGGACAAUGCGAGU---GAUAUGCC ..(((---.----((((......(((.((.((((......(-(((((.......))))))..(((((((.....))))))))))).))...)))......)))).))---)....... ( -25.80) >DroVir_CAF1 141803 96 + 1 ------------------AGGAAGAUUUUUCACAUUAAUUUCUGCAUAUUAAAAAUGCAAUUUGUUGCGUUAAUUGCAGCAUGUGAAAUGUAUCAGACAAUCCCAGC---GAUAGCA- ------------------.(((.....(((((((........(((((.......)))))...(((((((.....))))))))))))))(((.....))).)))..((---....)).- ( -22.80) >DroGri_CAF1 114824 112 + 1 UCUGG--UUGCGUUG--AAAAAAGAUUUUCCACAUUAAUUUCUGCAUAUUAAAAAUGCAAUUUGUUGCGUUAAUUGCAGCAUGCGAAAUGGAUCAGACAAUCGCAAC-GAGAUAGCA- (((.(--((((((.(--((((....))))).))(((.((((((((((.......)))))...(((((((.....)))))))...))))).))).........)))))-.))).....- ( -28.90) >DroWil_CAF1 153262 112 + 1 UGCGCCAUUGCACGGCUCAAAAAGAUUUUCCCCAUUAAUUU-UGCAUAUUAAAAAUGCAAUUUGUUGUAUUAAUUGCAGCAUGUGAAAUGUAUCAGACAAUGCCCAACC-AACC---- ((((....)))).(((.......(((((((..........(-(((((.......))))))..(((((((.....)))))))...))))...))).......))).....-....---- ( -17.94) >DroMoj_CAF1 134813 96 + 1 ------------------UGGAAGAUUUUCCACAUUAAUUUGCGCAUAUUAAAAAUGCAAUUUGUUGCGUUAAUUGCAGCAUGUGAAACGUAUCAGACAAUCCGAGU---GAUAGCA- ------------------(((((....)))))......((..(((((.......))))....(((((((.....))))))).)..))...(((((..(.....)..)---))))...- ( -18.40) >DroAna_CAF1 119813 107 + 1 UGUGC---C----GGCACAAAAAGAUUUUCCACAUUAAUGU-UGCAUAUUAAAAAUGCAAUUUGUUGCAUUAAUUGCAGCAUGUGAAAUGUAUCGGACAAUGUGAGU---GAUACGCC .....---.----(((..............((((.....((-(((((.......))))))).(((((((.....)))))))))))....((((((..(.....)..)---)))))))) ( -26.90) >consensus U__GC_________G__CAAAAAGAUUUUCCACAUUAAUUU_UGCAUAUUAAAAAUGCAAUUUGUUGCGUUAAUUGCAGCAUGUGAAAUGUAUCAGACAAUCCCAGU___GAUAGCA_ .......................(((.((.((((........(((((.......)))))...(((((((.....))))))))))).))...)))........................ (-13.86 = -13.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:08 2006