Locus 2679

Sequence ID 3L_DroMel_CAF1
Location 7,463,140 – 7,463,244
Length 104
Max. P 0.529409
window4193

overview

Window 3

Location 7,463,140 – 7,463,244
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 80.90
Mean single sequence MFE -26.48
Consensus MFE -15.44
Energy contribution -15.00
Covariance contribution -0.44
Combinations/Pair 1.30
Mean z-score -1.77
Structure conservation index 0.58
SVM decision value -0.01
SVM RNA-class probability 0.529409
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7463140 104 + 23771897
UUUCCCAACAUGUGUGUCGGUAUGAGCUGUGGCAGUAAGCAAAUUUACACGCUUAUCGCAGAAGUCGCAUCAGGCAAUCUUGAUGUGCAUAUCAUUUUUAUGGG
...(((((((....))).((((((.(((...((.((((((..........)))))).))...)))(((((((((....))))))))))))))).......)))) ( -30.20)
>DroPse_CAF1 112963 95 + 1
UUGCUCGAAAGU----C-GGUGGGAGCC----CAGUAAGCAAAUUUUCGCGCUUAUCGCCCCACUCAUAUCAGACAAUCUUGAUGUGCAUAUCACUUUUAUGGG
......((((((----.-((((((.((.----..((((((..........)))))).))))))))((((((((......))))))))......))))))..... ( -26.00)
>DroSec_CAF1 116609 103 + 1
UUUCCCAACAUGUGUGU-GGUAUGAACUGUGGCAGUAAGCAAAUUUUCACGCUUAUCGCAGAAGUCGCAUCAGACAAUCUUGAUGUGCAUAUCAUUUUUAUGGG
........((((...((-((((((..(((((...((((((..........)))))))))))....((((((((......))))))))))))))))...)))).. ( -29.50)
>DroEre_CAF1 118645 103 + 1
UUUCUCGAAAUGCUUGC-AGUAUGAGCUUUGGUAGUAAGCAAAUUUUCACGCUUAUCGCAGAAGUCACAUCAGACAAUCUUGAUGUGCAUAUCAUUUUUAUGGA
.(((..((((((..(((-(...(((.((((.(..((((((..........))))))..).)))))))((((((......))))))))))...))))))...))) ( -24.20)
>DroYak_CAF1 113935 103 + 1
UUUCUCGAAAUGCGGAC-AGUACGAGCUUUGGCAGUAAGCAAAUUUUCACGCUUAUCGCUGAAGUCACAUCAGACAAUCUUGAUGUGCAUAUCAUUUUUAUGGG
......((.((((....-.....((.(((..((.((((((..........)))))).))..)))))(((((((......))))))))))).))........... ( -28.20)
>DroAna_CAF1 112322 100 + 1
UUUUCAAACAAUUUUCA----CCGACUCGAGCCAGUAAGCAAAUUUUCGCGCUUAUCGCUCCACUCACAUCAGACAAUCUUGAUGUGCAUAUCAUUUUUAUGGG
.................----(((....((((..((((((..........)))))).))))....((((((((......)))))))).............))). ( -20.80)
>consensus
UUUCCCAAAAUGUGUGC_GGUAUGAGCUGUGGCAGUAAGCAAAUUUUCACGCUUAUCGCAGAAGUCACAUCAGACAAUCUUGAUGUGCAUAUCAUUUUUAUGGG
...((((........................((.((((((..........)))))).))......((((((((......)))))))).............)))) (-15.44 = -15.00 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:07 2006