Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,461,555 – 7,461,675 |
Length | 120 |
Max. P | 0.517752 |
Location | 7,461,555 – 7,461,675 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -23.25 |
Energy contribution | -24.38 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.42 |
Structure conservation index | 0.71 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7461555 120 + 23771897 UGAGGUAAUAACUUACUUCGUCAAGCGGCACAAAUUUUGGCGACAAGUCCUUCGGGUGCCAAAUUUUUUCCAUUUGGGUUCCGGUAUAGUCGUAUUUGUGCUAUUUAUUCUUAAGCGCAG .(((((((....))))))).....(((((((((((....(((((.......(((((..((((((.......))))))..)))))....)))))))))))))..((((....))))))).. ( -33.30) >DroSim_CAF1 111706 110 + 1 UGAGGUAAUAACUUACUUCGUCAAGCGGCACAAUUUUUGGCGACA---------AG-UCCAAAUUUCUUUCAUUUGGGUUCCGGUAUAGUCGUAUUUGUGCUAUUCAUUCUUAAGCGCAG .(((((((....))))))).....(((((((((....((((.((.---------(.-.((((((.......))))))..)...))...))))...))))))((........))..))).. ( -25.60) >DroEre_CAF1 117060 120 + 1 UGAGGUAAUAACUUACUUCGCGAAGCGGCACUCUUUUUGGCGACAAGUCCUUCGGGUGCCGAAUUUUAUCCAUCUGGGUUCCGGCAUAAUUGUAUUUGUGCUGUUCAUUCUCAAGCGCAG .(((((((....)))))))(((...((((((((.....(((.....)))....)))))))).............((((...((((((((......))))))))......))))..))).. ( -37.30) >DroYak_CAF1 110143 120 + 1 UGAGGUAAUAACAUACUUCGUCAAGCGGCACAAUGCUUGGCGACAAGUCCUUCGGGUGCCAAAUUUUUUCCAUCUGGGUUCCGGCAUAAUCAUAUUUGUGCUGUUCAUUCUUAAGCGCAG .((((((......)))))).....(((((((...(((((....))))).(....))))))........(((....)))...((((((((......)))))))).............)).. ( -34.30) >consensus UGAGGUAAUAACUUACUUCGUCAAGCGGCACAAUUUUUGGCGACAAGUCCUUCGGGUGCCAAAUUUUUUCCAUCUGGGUUCCGGCAUAAUCGUAUUUGUGCUAUUCAUUCUUAAGCGCAG .(((((((....))))))).....(((((((....((((....))))........)))))...............((((..((((((((......))))))))...))))......)).. (-23.25 = -24.38 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:06 2006