Locus 2676

Sequence ID 3L_DroMel_CAF1
Location 7,445,548 – 7,445,642
Length 94
Max. P 0.828402
window4189

overview

Window 9

Location 7,445,548 – 7,445,642
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 85.07
Mean single sequence MFE -31.64
Consensus MFE -26.74
Energy contribution -26.61
Covariance contribution -0.14
Combinations/Pair 1.17
Mean z-score -2.03
Structure conservation index 0.85
SVM decision value 0.71
SVM RNA-class probability 0.828402
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7445548 94 + 23771897
ACU------UCAACAUGGCAUUCCGCUAUCUCAUCUCUCUGUGCGCCCUGGUGGCCUGCGCCAAUGCUGGUCUCUUGGCCAGCCAUGUGGCCAUUGCUAA
...------......(((((..((((.............((.((((((....))...))))))..(((((((....)))))))...))))....))))). ( -29.80)
>DroPse_CAF1 94648 94 + 1
UCC------ACAACAUGGCCUUCCGCUACCUCAUCACCCUCUGCGCCCUGGUGGCCUACGCCCAAGCCGGCCUCCUGGCCAGCCACGUGGCCGUAGCCAA
...------......((((.....((((((...................)))))).((((.(((.((.((((....)))).))....))).)))))))). ( -31.51)
>DroSim_CAF1 96029 94 + 1
ACU------CCAACAUGGCUUUCCGCUACCUCAUCUCUCUGUGCGCCCUGGUGGCCUGCGCCAAUGCUGGUCUCCUGGCCAGCCAUGUGGCCAUUGCCAA
...------......((((.....((((((...................)))))).((.((((..(((((((....)))))))....))))))..)))). ( -33.21)
>DroEre_CAF1 99982 100 + 1
ACUUCCACUCCAACAUGGCUUUCCGCUACCUCAUCACUCUGUGCGCCCUGGUGGCCUGCGCCAAUGCUGGUCUCUUGGCCAGCCAUGUGGCCAUUGCCAA
...............((((.....((((((....(((...)))......)))))).((.((((..(((((((....)))))))....))))))..)))). ( -34.20)
>DroMoj_CAF1 103119 94 + 1
UCC------GCACAAUGGCCUUCCGUUACGUCAUCUCCCUCUGCGCCCUGGUGGCCUAUGCCAAUGCCGGUCUCCUGGCCAGCCAUGUGGCCGUGGCUAA
.((------((.....((((..(((...((.((........))))...))).))))...((((..((.((((....)))).))....)))).)))).... ( -29.60)
>DroPer_CAF1 94994 94 + 1
UCC------ACAACAUGGCCUUCCGCUACCUCAUCACCCUCUGCGCCCUGGUGGCCUACGCCCAAGCCGGCCUCCUGGCCAGCCACGUGGCCGUAGCCAA
...------......((((.....((((((...................)))))).((((.(((.((.((((....)))).))....))).)))))))). ( -31.51)
>consensus
ACC______ACAACAUGGCCUUCCGCUACCUCAUCACCCUCUGCGCCCUGGUGGCCUACGCCAAUGCCGGUCUCCUGGCCAGCCAUGUGGCCAUUGCCAA
............(((((((.....((................))(((..((.((((...((....)).)))).)).)))..)))))))(((....))).. (-26.74 = -26.61 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:03 2006