Locus 2674

Sequence ID 3L_DroMel_CAF1
Location 7,439,601 – 7,439,721
Length 120
Max. P 0.773843
window4186

overview

Window 6

Location 7,439,601 – 7,439,721
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.88
Mean single sequence MFE -27.75
Consensus MFE -23.60
Energy contribution -23.88
Covariance contribution 0.28
Combinations/Pair 1.12
Mean z-score -1.43
Structure conservation index 0.85
SVM decision value 0.54
SVM RNA-class probability 0.773843
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7439601 120 + 23771897
ACGCAUUUUUUUAAGGGAUUUAAUGGCGCGCAAAUAGCGAAGGACAUUACUUUGCUGGAUAAACUGGUGGGUCACCAUCAUGUUAUGCUUACUAUAAGUCUAGCACUAUGUGUUAUCAUA
((((((.........(((((((.(((...(((..((((((((.......))))))))....(((((((((....)))))).))).)))...))))))))))......))))))....... ( -31.86)
>DroSec_CAF1 93970 119 + 1
ACACACUU-UUUAAGGGAUUUAAUGCCGCACAAAUAGCAAAAGAUAUUACUUUGCUGGAUAAACUGGUGGGUCACCAUCACGUUAUACUUACUAUAAGUCUAGCACUAUGUGUUAUUAUA
((((((((-((...((.((...)).))((.......))))))).........((((((((....((((((....))))))..(((((.....)))))))))))))...)))))....... ( -25.30)
>DroSim_CAF1 91042 119 + 1
ACGCACUU-UUUAAGGGAUUUAAUGCCGCACAAAUAGCAAAAGAUAUUACUUUGCUGGAUAAACUGGUGGGUCACCAUCAUGUUAUACUUACUAUAAGUCUAGCACUAUGUGUUAUUAUA
((((((((-((...((.((...)).))((.......))))))).........((((((((....((((((....))))))..(((((.....)))))))))))))...)))))....... ( -25.00)
>DroEre_CAF1 93811 119 + 1
UCACACUU-UUUAAGGGAUUUAAUGGCGCGCAAAUAGCAAAAGACAUCACUUUGCUGGAUAAACUGGUGGGUCACCAUCAUGUUAUUCUUACUAUAAGUUUAGCACUCUGUGUUAUUAUA
........-...........(((((((((.....(((((((.........))))))).......((((((....))))))(((((..((((...))))..)))))....))))))))).. ( -25.60)
>DroYak_CAF1 87618 119 + 1
UCACACUU-UUUAAGGGAUUUAAUGGCGCGCAAAUAGCAAAGGACAUCACUUUGCUGGACAAACUGGUGGGUCACCAUCAUGUUAUGCUUAUUAUAAGUUUAGCACUCUGUGUCAUAAUA
........-.............(((((((.....((((((((.......)))))))).......((((((....))))))(((((.(((((...))))).)))))....))))))).... ( -31.00)
>consensus
ACACACUU_UUUAAGGGAUUUAAUGGCGCGCAAAUAGCAAAAGACAUUACUUUGCUGGAUAAACUGGUGGGUCACCAUCAUGUUAUACUUACUAUAAGUCUAGCACUAUGUGUUAUUAUA
....................((((((((((....(((((((.........))))))).......((((((....)))))).((((.(((((...))))).))))....)))))))))).. (-23.60 = -23.88 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:01 2006