| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 761,261 – 761,363 |
| Length | 102 |
| Max. P | 0.513958 |
| Location | 761,261 – 761,363 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.63 |
| Mean single sequence MFE | -18.23 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.80 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 761261 102 - 23771897 UUUCUGUUGUGUUUUUU---------UUUUUUGUGCUUUUCGCAUAUUUUUUGCAUUUGUUUUUAUUGCAUUUGCAACGGCAACCUUCAAAGCUUCAACAUGAACAUGAAC .((((((((.(((((..---------.....(((((.....)))))....(((((..(((.......)))..)))))...........)))))..))))).)))....... ( -19.70) >DroSec_CAF1 116426 95 - 1 UUUCUGUUGU-U---------------UUUUUGUGCUUUUCGCAUAUUUUUUGCAUUUGUUUUUAUUGCAUUUGCAACGGCAACCUUCAAAGCUUCAACAUGAACAUGAAC .(((...(((-(---------------(..(((.(((((...........(((((..(((.......)))..))))).(....)....)))))..)))...))))).))). ( -17.40) >DroSim_CAF1 118480 96 - 1 UUUCUGUUGUGU---------------UUUUUGUGCUUUUCGCAUAUUUUUUGCAUUUGUUUUUAUUGCAUUUGCAACGGCAACCUUCAAAGCUUCAACAUGAACAUGAAC .((((((((.((---------------(((.(((((.....)))))....(((((..(((.......)))..)))))...........)))))..))))).)))....... ( -19.70) >DroEre_CAF1 122218 111 - 1 UCUCUGUUGUAUUGUUUGUUGUUGUAUUUUUUGUGUUUUUCGCAUAUUUUUUGCAUUUGUUUUUAUUGCAUUUGCAACGGCAACCUUCAAAGCUUCAACAUGAACAUGAAC ..(((((((..(((...((((((((......((((.....)))).......((((..(((.......)))..))))))))))))...))).....))))).))........ ( -23.30) >DroYak_CAF1 123545 95 - 1 UCUCUGUUGUAU----------------UUUUGUGUUUUUCGCAUAUUUUUUGCAUUUGUUUUUAUUGCAUUUGCAACGGCAACCUUCAAAGCUUCAACAUGAACAUGAAC ..(((((((...----------------(((((.................(((((..(((.......)))..))))).(....)...)))))...))))).))........ ( -15.00) >DroAna_CAF1 133641 85 - 1 GCUUUUUU--------------------UAUUUUGUUUUU---AAUUUUAUUGCAUUUGC---AACUGCAACGGCAACGGCAACCUUCAAAAAGCCAACAUGAACAUGAAC (((((((.--------------------....((((....---.......(((((.....---...)))))((....)))))).....)))))))...(((....)))... ( -14.30) >consensus UCUCUGUUGU_U_______________UUUUUGUGCUUUUCGCAUAUUUUUUGCAUUUGUUUUUAUUGCAUUUGCAACGGCAACCUUCAAAGCUUCAACAUGAACAUGAAC .....(((((.....................(((((.....)))))....(((((..(((.......)))..)))))..)))))..............(((....)))... (-11.22 = -11.80 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:51 2006