| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,419,606 – 7,419,726 |
| Length | 120 |
| Max. P | 0.663048 |
| Location | 7,419,606 – 7,419,726 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.06 |
| Mean single sequence MFE | -41.02 |
| Consensus MFE | -33.39 |
| Energy contribution | -32.95 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7419606 120 + 23771897 AACAUCCUGCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCAUUCGAUGCUCGGAAUGCCUGCCACGGCGAGGAUGGCAAGACGGUCCUCAGCCAGACAUUAG ........((((((((.(((.(((((((((((...)))))))))))........(((.....)))....)))))))))))...(((((((((.(.....).)))))).)))......... ( -48.40) >DroVir_CAF1 79753 120 + 1 CUUCACCCGCAGGCAUCUCCAUGCACAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCCUUCGAUGCCCGCAACGCCUGUCACGGCGAGGAUGGCAAGACGGUGCUCAGCCAGACCUUGG ..(((.((((.((((((....(((((((((((...)))))))))))(....)..........)))))).))..((((......)))).)).)))((((..(((.....)))....)))). ( -43.20) >DroGri_CAF1 63192 120 + 1 CUCUGCUCGCAGGCAUCUCCAUGCACAAAGGCUAUGCCUUUGUGCAGUUCACCAACCCGUUCGAUGCCCGCAACGCCUGUCACGGCGAGGAUGGCAAAACAGUGCUCAGCCAAACACUAG ........((.((((((....(((((((((((...)))))))))))(((....)))......)))))).))..((((......)))).((.(((((......))).)).))......... ( -43.00) >DroWil_CAF1 86724 120 + 1 UCUAUUUUUCAGGCAUUUCCAUGCAUAAGGGCUAUGCCUUUGUCCAGUUUACCAAUCCGUUCGAUGCGCGUAAUGCCUGCCAUGGCGAGGAUGGUAAAACGGUUCUCAGCCAAACGCUAG .........((((((((...((((((((((((...))))))))...............((.....))))))))))))))...((((((((((.(.....).)))))).))))........ ( -35.50) >DroMoj_CAF1 72716 120 + 1 CUCCACCUGCAGGCAUCUCGAUGCACAAGGGCUACGCCUUUGUGCAGUUCACCAAUCCCUUCGACGCCCGCAACGCCUGUCACGGCGAGGACGGCAAGACGGUGCUCAGCCAGACCCUAG ......((((.((((((((..(((((((((((...)))))))))))...................(((..(..((((......))))..)..)))..)).))))))..).)))....... ( -41.00) >DroAna_CAF1 70901 117 + 1 UA---CCCGCAGGCAUAUCCAUGCAUAAGGGCUAUGCUUUUGUGCAGUUCACCAACCCGUUCGAUGCCCGCAAUGCCUGCCACGGAGAGGAUGGAAAGACGGUCCUUAGUCAGACCUUAG ..---((.((((((((.....(((((((((((...)))))))))))..................((....))))))))))...)).((((((.(.....).))))))............. ( -35.00) >consensus CUCAACCCGCAGGCAUCUCCAUGCACAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCGUUCGAUGCCCGCAACGCCUGCCACGGCGAGGAUGGCAAGACGGUGCUCAGCCAGACCCUAG ........((((((.......(((((((((((...)))))))))))............(((((.....)).)))))))))...((((((.((.(.....).)).))).)))......... (-33.39 = -32.95 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:53 2006