| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,416,418 – 7,416,520 |
| Length | 102 |
| Max. P | 0.553225 |
| Location | 7,416,418 – 7,416,520 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.88 |
| Mean single sequence MFE | -28.72 |
| Consensus MFE | -20.16 |
| Energy contribution | -21.47 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7416418 102 - 23771897 CAGGCUCGGGAUGCCUAAUGCCCCGCAUUGUCUACGGCUUAAAGUCAACGACUCUGUGGACUACAUUUCGCAGCCUCCUUGUUCGAGCAU-------UUCGCACCC------CGA .....(((((.(((..(((((.(((((..(((...(((.....)))...)))..)))))........(((.(((......))))))))))-------)..))).))------))) ( -32.80) >DroSec_CAF1 71000 102 - 1 CAGGCUCGGGAUGCCUAAUGCCCCGCAUUGUCUACGGCUUAAAGUCAACGACUCUGUGGACUACAUUCCGCAGCCUCCUUGUUCGAGGAU-------UUCGCUCCC------CGA .((((((((((((...(((((...)))))((((((((.....((((...))))))))))))..))))))).)))))......(((.(((.-------.....))).------))) ( -35.50) >DroSim_CAF1 65668 102 - 1 CAGGCUCGGGAUGCCUAAUGCCCCGCAUUGUCUACGGCUUAAAGUCAACGACUCUGUGGACUACAUUCCGCAGCCUCCUUGUUCGAGGAU-------UUCGCUCCC------CGA .((((((((((((...(((((...)))))((((((((.....((((...))))))))))))..))))))).)))))......(((.(((.-------.....))).------))) ( -35.50) >DroEre_CAF1 64704 101 - 1 CAGGCUCGGGCUGCCUAAUGCCCCGCAUUGUCUGCGGCUUAAAGUCAACGACUCUGUGGACUACAUUUCGCAGGCUCCUUGGUCGAGUAU--------UCGCUCCC------CGA ...((..((((........)))).))...((((((((.....((((.(((....))).)))).....))))))))...((((..((((..--------..)))).)------))) ( -31.90) >DroYak_CAF1 63837 109 - 1 CAGGCUCAGGAUGCCUAAUGCCCCGCAUUGUCUACGGCUUAAAGUCAACGACUCUGUGGACUACAUUUCGCUGCCUGCCUAGUUGAGUAUUUCGCAUUUCGCUCCC------CGA ..((....(((.((..(((((.(((((..(((...(((.....)))...)))..)))))(((..(((..((.....))..)))..))).....)))))..))))))------).. ( -26.70) >DroAna_CAF1 67548 94 - 1 ---------AAAGCCUAAUUCCUCGUAUUGUCUACGGCUUAAAGUCAACGACUUUGUGGACUACUUUCCCCCGUCAUUUUGUU-----AU-------UUUUUUCCUUAUUUUCAU ---------...............(((..(((((((.....(((((...)))))))))))))))...................-----..-------.................. ( -9.90) >consensus CAGGCUCGGGAUGCCUAAUGCCCCGCAUUGUCUACGGCUUAAAGUCAACGACUCUGUGGACUACAUUCCGCAGCCUCCUUGUUCGAGGAU_______UUCGCUCCC______CGA .((((((((((((...(((((...)))))((((((((.....((((...))))))))))))..))))))).)))))....................................... (-20.16 = -21.47 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:52 2006