Locus 2666

Sequence ID 3L_DroMel_CAF1
Location 7,411,182 – 7,411,298
Length 116
Max. P 0.518254
window4175

overview

Window 5

Location 7,411,182 – 7,411,298
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.45
Mean single sequence MFE -35.76
Consensus MFE -26.39
Energy contribution -26.95
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -1.55
Structure conservation index 0.74
SVM decision value -0.03
SVM RNA-class probability 0.518254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7411182 116 - 23771897
CUCCAUUCCC-GGCA---UUCCGAUGGACUACAGCUAUAGCAUUGGCUCCAAGUCGCCAGUGUUCAUCAGCAAAUGUGCCCCGUACAACUUUCUGCGGGAAUACCGCCUAGGCUGCGAUU
.((((..(..-(((.---....(((((((....((....))((((((........))))))))))))).(((....)))((((((........))))))......)))..)..)).)).. ( -34.00)
>DroSec_CAF1 65771 117 - 1
CUCCAUUCCCUAGCA---UUCCGAUGGAGUACAGCUAUAGCAUUGGCUCCACGUCGCCAGUGUUCAUCAGCCAAUGUGCCCCGUAUAACUUUCUGCGGGAAUACCGCCUAGCCUGCGAUU
....(((((((((..---.....((((.(((((((((((((((((((........))))))))).)).)))...))))).))))........))).))))))..(((.......)))... ( -35.26)
>DroSim_CAF1 59472 117 - 1
CUCCAUUCCCUAGCA---UUCCGAUGGAGUACAGCUAUAGCAUUGGCUCCACGUCGCCAGUGUUCAUCAGCCAAUGUGCCCCGUACAACUUUCUGCGGGAAUACCGCCUAGCCUGCGACU
....(((((((((..---.....((((.(((((((((((((((((((........))))))))).)).)))...))))).))))........))).))))))..(((.......)))... ( -35.26)
>DroEre_CAF1 59206 119 - 1
CUCCAUUCCU-GGCAUCAUUGUGAUGGACUACGACUAUUGCAGUGGCGCCACAACGCCAGUGUUCAUCAGCCACUGUGCCCCAUACAACUUUCUGCGAGAAUACCGCCUGGCGUGCGAGG
((((.....(-(((..(((((..((((.......))))..)))))..))))..((((((((((((..(((....((((.....)))).....)))...))))))....))))))).))). ( -37.20)
>DroYak_CAF1 59664 116 - 1
CUCCAUUCCG-GGCA---UUGCGAUGGCCUACGACUAUUGCACUGGCUCCACAUUGCCAGUGUUCAUCAGCCACUGUGCCCCGUACAACUUUCUGCGCGAAUACCGCCUAGCCUGCGAUG
...((((.((-(((.---..(((.((((....((.....((((((((........))))))))...)).)))).(((((...)))))......)))(((.....)))...))))).)))) ( -37.10)
>consensus
CUCCAUUCCC_GGCA___UUCCGAUGGACUACAGCUAUAGCAUUGGCUCCACGUCGCCAGUGUUCAUCAGCCAAUGUGCCCCGUACAACUUUCUGCGGGAAUACCGCCUAGCCUGCGAUU
....((((((..(((........((((..(((((((...((((((((........)))))))).....)))...))))..)))).........)))))))))..(((.......)))... (-26.39 = -26.95 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:50 2006