Locus 2665

Sequence ID 3L_DroMel_CAF1
Location 7,409,530 – 7,409,641
Length 111
Max. P 0.694142
window4174

overview

Window 4

Location 7,409,530 – 7,409,641
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.98
Mean single sequence MFE -29.43
Consensus MFE -21.66
Energy contribution -20.94
Covariance contribution -0.72
Combinations/Pair 1.24
Mean z-score -1.76
Structure conservation index 0.74
SVM decision value 0.34
SVM RNA-class probability 0.694142
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7409530 111 + 23771897
UAGAGGCUAUCAGAGAUGUGCGGUACCCAACUCAGGUACAAAUCGCCCGUAGCUUAUCGCGGUACAAUUACAGUGCCACACCAAAAACAAGCA---------AAACGUUGAUAUCGCGCG
...(((((((..(.(((.....(((((.......)))))..))).)..)))))))..(((((((((((.....(((..............)))---------....)))).))))))).. ( -27.24)
>DroSec_CAF1 64142 109 + 1
UAGAGACUAUCAGAGAUGUGCGGUACCUAACUCAGGUACACAUAGCUUGUAGCUUAUCUCGGUACAAUAACAGUGCCACACCAAAAAUAAGCA---------UAACGUUGAUAUUG--CG
.......(((((((((((.((.((((((.....))))))(((.....))).)).))))))(((((.......)))))................---------......)))))...--.. ( -27.90)
>DroSim_CAF1 57846 109 + 1
UAGAGACUAUCAGAGAUGUGCGGUACCUAACUCAGGUACACAUAGCUUGUAGCUUAUCUCGGUACAAUAACAGUGCCACACCAAAAAUAAGCA---------CAACGUUGAUAUUG--CG
.......(((((((((((.((.((((((.....))))))(((.....))).)).))))))(((((.......)))))................---------......)))))...--.. ( -27.90)
>DroEre_CAF1 57501 118 + 1
UAGAGACUAUCAGAGAUGCGCGGUACCUAAUUCAGGUACACAUCGUUUGUAGCUUGUCUCGGUACAACUGCAGUGCCACACCAAAAAUAAACUUGAUGAAAUAAACGUUGAUAUCG--CG
..(.((.(((((((((((.((.((((((.....))))))(((.....))).)).))))))(((((.......))))).((.(((........))).))..........))))))).--). ( -28.50)
>DroYak_CAF1 57920 118 + 1
UCGAGACUGUCAGAGAUGCGCGGUACCUAACUCUGGUACACAUCGUCUCUGACUUAUCGCGGUACAAUUGCAGUGCCACACCAAAAAUAAACUUGAUAAAAUAAACGUUGAUAUCG--CG
..((....((((((((((....(((((.......)))))....))))))))))...))(((((((.......))))).................((((.(((....)))..)))))--). ( -35.60)
>consensus
UAGAGACUAUCAGAGAUGUGCGGUACCUAACUCAGGUACACAUCGCUUGUAGCUUAUCUCGGUACAAUUACAGUGCCACACCAAAAAUAAGCA_________AAACGUUGAUAUCG__CG
....((.(((((((((((....(((((.......))))).....((.....)).))))))(((((.......)))))...............................)))))))..... (-21.66 = -20.94 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:48 2006