Locus 2663

Sequence ID 3L_DroMel_CAF1
Location 7,404,382 – 7,404,482
Length 100
Max. P 0.500000
window4171

overview

Window 1

Location 7,404,382 – 7,404,482
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 89.60
Mean single sequence MFE -19.67
Consensus MFE -15.16
Energy contribution -16.36
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.77
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7404382 100 + 23771897
UGUCCUAUAUUUUUUUGUUUUUCCAUGAGCAGCCAAAACCAAUAGCAGCAUCACAGCGCACAAAUGAAUUUAUUUUUUUUUAGUUGGCUGUUUUGGAAAA
..................(((((((.((((((((((........((.((......))))..(((((....)))))........))))))))))))))))) ( -23.10)
>DroSec_CAF1 59024 98 + 1
UGUCCUAUAUUUUUCUGUUUUUCCAUGAGCAGCCAAAACCAAUAGCAGCAUC--AGCGCACAAAUGAAAUUUUUUUUUUUUAGUUGGCUGUUUUGGAAAA
..................(((((((.((((((((((........((.((...--.)))).....(((((........))))).))))))))))))))))) ( -24.60)
>DroSim_CAF1 52781 97 + 1
UGUCCUAUAUUUUUCUGUUUUUCCCUGAGCAGCCAAAGCCAAUAGCAGCAUC--AGCGCACAAAUGAAAUUUUU-UUUUUUAGUUGGCUGUUUUGGAAAA
..................((((((..((((((((((........((.((...--.)))).....(((((.....-..))))).)))))))))).)))))) ( -23.30)
>DroEre_CAF1 52475 92 + 1
UGUCCUAUAUUUCUCUGUUUUUCCAUGAGCAGCCAAAACCAAUAUCAGCAUC--AGCGCACAAAUGAAAUUUU----UU-UAGUUGGCAGUU-UGGAAAA
..............((((((......))))))(((((.(((((....((...--...)).....((((.....----))-)))))))...))-))).... ( -14.20)
>DroYak_CAF1 52709 93 + 1
UGUCCCAUAUUCCUUUGUUUUUCCAUGAGCAGCCAAAACCAAUAUCCACAUC--AGCGCACAAAUGAAAUUUU----UUCUAGUUGGCCGUU-UGGAAAA
..................(((((((..(((.(((((..............((--(.........)))......----......))))).)))-))))))) ( -13.17)
>consensus
UGUCCUAUAUUUUUCUGUUUUUCCAUGAGCAGCCAAAACCAAUAGCAGCAUC__AGCGCACAAAUGAAAUUUUU_UUUUUUAGUUGGCUGUUUUGGAAAA
..................(((((((.((((((((((...........((......)).((....)).................))))))))))))))))) (-15.16 = -16.36 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:46 2006