| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,386,049 – 7,386,149 |
| Length | 100 |
| Max. P | 0.790783 |
| Location | 7,386,049 – 7,386,149 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.68 |
| Mean single sequence MFE | -22.35 |
| Consensus MFE | -16.89 |
| Energy contribution | -16.92 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.790783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7386049 100 + 23771897 UGCAAAAUUGCAUUAACUACGCACGCUUGUCACUUUCUGAUAAGGGAAUUAAAUUUUGCGGUUUUACGCUGGCGGCAGCA---------CAC--AAAA----CCAAGC----CGAAGCC .((((((((((.........)).(.(((((((.....))))))).).....))))))))((((((..((((....)))).---------...--))))----))....----....... ( -25.70) >DroVir_CAF1 42499 85 + 1 UGCAAAAUUGCAUUAAAUACGCACGCUUGUCACUUUUUGAUAAGGGAAUUAAAUUUUGCGGUUUAACGCUGCCGGCA------------UAC--AAGU----C---------------- .((((((((((.........)).(.(((((((.....))))))).).....))))))))(((........)))(((.------------...--..))----)---------------- ( -19.20) >DroGri_CAF1 29422 89 + 1 UGCAAAAUUGCAUUAAAUACGCACGCUUGUCACUUUUUGAUAAGGGAAUUAAAUUUUGUGGUUUAACGCUGGCGGCA------------CAC--AAGC----CCCAA------------ ((((....))))........((.(.(((((((.....))))))).)..(((((((....))))))).))(((.(((.------------...--..))----)))).------------ ( -22.00) >DroWil_CAF1 40604 113 + 1 UGCAAAAUUGCAUUAAAUACGCACGCUUGUCACUUUUUGAUAAGGGAAUUAAAUUUUGCGGUUUAACGCCAACGGCAACGCCAACAAAACAC--AAAACUCCCCAAGC----UCAAGCU .((((((((((.........)).(.(((((((.....))))))).).....))))))))(((.....)))...(((...)))..........--...........(((----....))) ( -22.50) >DroMoj_CAF1 38064 91 + 1 UGCAAAAUUGCAUUAAAUACGCACGCUUGUCACUUUUUGAUAAGGGAAUUAAAUUUUGCGGUUUAACGCUGCCGGCA------------CACACAAGG----CCCUA------------ .((((((((((.........)).(.(((((((.....))))))).).....))))))))(((........)))(((.------------(......))----))...------------ ( -22.20) >DroAna_CAF1 40699 104 + 1 UGCAAAAUUGCAUUAACUACGCACGCUUGUCACUUUCUGAUAAGGGAAUUAAAUUCUGCGGUUUUACGCUGGCGGCGUCA---------CAC--AAAA----CCAAACCCUUCGUUGUC ((((....)))).((((...((...(((((((.....)))))))(((((...)))))))((((((((((.....))))..---------...--))))----)).........)))).. ( -22.50) >consensus UGCAAAAUUGCAUUAAAUACGCACGCUUGUCACUUUUUGAUAAGGGAAUUAAAUUUUGCGGUUUAACGCUGGCGGCA____________CAC__AAAA____CCAAA____________ .((((((((((.........)).(.(((((((.....))))))).).....))))))))........((.....))........................................... (-16.89 = -16.92 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:43 2006