Locus 266

Sequence ID 3L_DroMel_CAF1
Location 753,085 – 753,185
Length 100
Max. P 0.851559
window398

overview

Window 8

Location 753,085 – 753,185
Length 100
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 75.06
Mean single sequence MFE -16.23
Consensus MFE -12.10
Energy contribution -12.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.13
Structure conservation index 0.75
SVM decision value 0.79
SVM RNA-class probability 0.851559
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 753085 100 - 23771897
AAAAAA--CUUAUUAA-------AAAAAAACUGGACCAAAAAAUAUAUAGUCACCAACGACUUGCUCCAGGUGAGGCUCGAACUCACAACCCCGGCAUAGCUCAUACAC
......--........-------.......(((((.((..........((((......)))))).)))))(((((.......)))))...................... ( -16.60)
>DroVir_CAF1 128195 95 - 1
AAUAAAAAUA----AAGCG---UAAAAAAA------UAAA-AAAGAACAGUCGACAACGACCUGCUCCAGGUGAGGCUCGAACUCACAACCCCGGCAUUGCUCAUACAC
..........----.((((---........------....-........((((....)))).((((....(((((.......)))))......)))).))))....... ( -16.00)
>DroPse_CAF1 118194 100 - 1
AAAGAA---------AGAAAAUGAAGAAAAGGAGGGCAAAAAAAAUUAAGUCUCAACCGACCUGCUCCAGGUGAGGCUCGAACUCACAACCCCGGCAUUGCUCAUACAC
......---------..................((((((..........(((......))).((((....(((((.......)))))......))))))))))...... ( -19.50)
>DroGri_CAF1 144332 95 - 1
AUGGAAAAUU----AAUUG---AAAAAAAA------UAUG-AAAAAAUUGUCGACAAAGACCUGCUCCAGGUGAGGCUCGAACUCACAACCCCGGCAUAGCUCAUACAC
..........----.....---........------((((-(......(((((......(((((...)))))(((.......))).......)))))....)))))... ( -15.60)
>DroSec_CAF1 108214 108 - 1
UAUAAAGUCUUAUUAAGAA-AAAAAAAAAACUGUAUCAAAAAAUACAUAGUCACCAGCGACUUGCUCCAGGUGAGGCUCGAACUCACAACCCCGGCAUAGCUCAUACAC
....(((((..........-...........(((((......)))))..((.....)))))))(((....(((((.......)))))......)))............. ( -15.10)
>DroEre_CAF1 113778 108 - 1
AUACAAAACUAUUUAAGAAAAAAAAAAAAACUGCACCAAA-AAGAUAUAGUCACCAGCGACUUGCUCCAGGUGAGGCUCGAACUCACAACCCCGGCAUAGCUCAUACAC
................................((......-.......((((......))))((((....(((((.......)))))......))))..))........ ( -14.60)
>consensus
AAAAAAAACU____AAGAA___AAAAAAAACUG_A_CAAA_AAAAUAUAGUCACCAACGACCUGCUCCAGGUGAGGCUCGAACUCACAACCCCGGCAUAGCUCAUACAC
.................................................(((......))).((((....(((((.......)))))......))))............ (-12.10 = -12.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:50 2006