Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,375,224 – 7,375,341 |
Length | 117 |
Max. P | 0.906620 |
Location | 7,375,224 – 7,375,341 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.07 |
Mean single sequence MFE | -36.75 |
Consensus MFE | -24.60 |
Energy contribution | -23.17 |
Covariance contribution | -1.44 |
Combinations/Pair | 1.57 |
Mean z-score | -1.54 |
Structure conservation index | 0.67 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906620 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7375224 117 + 23771897 UAAGAUUGGACCCUCUGCCACAACCAUUAAUUAUGCGGCAUCCGGAGCUAGCGAUGAUUAUGCCUUCAAUGCUGGCUUCCCCAUAUCAUUCACCAUGGAACUGCCCUUCGGUGGUA---C ...((((((......((((.((...........)).))))...((((((((((.(((........))).)))))))))).))).)))....(((((.(((......))).))))).---. ( -36.20) >DroEre_CAF1 21303 117 + 1 UAAGGUUGGGCCCUCUACCACAACUAUAAACUAUGCGGCAUCCGGAGCUAGCGAUGAUUAUGCCUUCAAUGCUGGCUUCCCGAUUUCCUUCACCAUGGAACUGCCAUUCGGUGGUA---C ...(((((((.......)).)))))........(((((.(((.((((((((((.(((........))).))))))).))).)))..))..((((((((.....))))..)))))))---. ( -35.20) >DroWil_CAF1 23620 117 + 1 UGAGAUUGGACCAUCGACCGAA---GUUUUGUAUGUGGCAGCUGGGGCCAGUGAUGAUUAUGCCUUCAAUGCUGGUUUCCCCAUAUCAUUCACCAUGGAAUUGCCACCGGGUGGUCAACA ........((((((((((....---)))......((((((..(((((((((((.(((........))).))))))...)))))....((((......))))))))))..))))))).... ( -37.60) >DroYak_CAF1 19744 117 + 1 UACGGUUGGUCCCUCUACCACAACCAUCAAUUAUGCGGCAUCCGGAGCUAGCGAUGAUUAUGCCUUCAAUGCUGGCUUUCCGAUUUCCUUCACCAUGGAACUGCCAUUCGGAGGCA---C ...(((((............)))))...........((((..(((((((((((.(((........))).)))))))..))))..((((........)))).))))...........---. ( -33.70) >DroMoj_CAF1 26696 117 + 1 CCAGGUGGGCUGCUCCACCCA---AUUGCUGUAUCCAGCUGCCGGUGCUAGCGAUGAUUAUGCCUUCAAUGCUGGGUUCCCCAUAUCAUUUACCAUGGAACUGCCCGCUGGCGGCGAUAA ...((((((....))))))..---.......((((..((((((((((((((((.(((........))).))))))(((((................)))))....)))))))))))))). ( -41.19) >DroPer_CAF1 19192 114 + 1 CGAAAUCGGUUCGUCCACCA---ACGUUCUUUACGUGGCUGCUGGGGCCAGCGAUGAUUAUGCCUUCAAUGCAGGCUUCCCCAUAUCGUUCACCAUGGAACUGCCGCCCGGCGGCA---C .......(((......))).---((((.....)))).((((((((((((.(((.(((........))).))).)))...........((((......)))).....))))))))).---. ( -36.60) >consensus UAAGAUUGGACCCUCUACCACA_CCAUUAAUUAUGCGGCAGCCGGAGCUAGCGAUGAUUAUGCCUUCAAUGCUGGCUUCCCCAUAUCAUUCACCAUGGAACUGCCAUCCGGUGGCA___C ......(((........))).................((.(((((((((((((.(((........))).)))))))....................((.....)).)))))).))..... (-24.60 = -23.17 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:40 2006