Locus 2658

Sequence ID 3L_DroMel_CAF1
Location 7,373,579 – 7,373,674
Length 95
Max. P 0.605846
window4164

overview

Window 4

Location 7,373,579 – 7,373,674
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.84
Mean single sequence MFE -28.02
Consensus MFE -19.97
Energy contribution -19.56
Covariance contribution -0.41
Combinations/Pair 1.40
Mean z-score -1.13
Structure conservation index 0.71
SVM decision value 0.15
SVM RNA-class probability 0.605846
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7373579 95 - 23771897
-------UAUUUAAUACAUCUCGAUCACUUUCUCGGCCAUGGCACGGAUGCCAAUCCAGGUUUCGGUGACAAACUCAUCGAUUCGGGUGACUGGAGGAUUGA
-------.........((((((((........)))((....))..))))).((((((.....(((((((.....)))))))(((((....))))))))))). ( -29.50)
>DroVir_CAF1 24784 98 - 1
CUU----UAUUUAAUACUUUUCGAUAACCUUUUCGGCCAUGGCACGAAUACCUAUCCAGGUUUCGGUUACAAACUCAUCGAUUUUGCUAGCCGGUGGAUCAA
...----...............(((.(((..((((((....)).)))).((((....))))...(((((((((.((...)).)))).))))))))..))).. ( -20.90)
>DroPse_CAF1 17298 96 - 1
A------CUUCUAGUAAAUCUCGAUGAGCUUCUCGGCCAUGGCACGAAUGCCGAUCCAAGUCUCGGUCACGAACUCGUCGAUGCGCGUGACUGGGGGAUUGA
.------((((((((.....((((((((.(((..((((..((((....))))(((....)))..))))..)))))))))))........))))))))..... ( -32.62)
>DroSim_CAF1 18119 102 - 1
ACAUUUUCUUCUAAUACAUCUCGAUCACUUUCUCGGCCAUGGCACGGAUGCCAAUCCAGGUUUCGGUGACGAACUCAUCGAUGCGGGUCACUGGAGGAUUGA
.((...(((((((.........((......))..((((.(((((....)))))......((.(((((((.....))))))).)).))))..))))))).)). ( -28.70)
>DroAna_CAF1 19708 98 - 1
UUA----CUUUUAAUAUAAUUCGAAGAGCUUCUCGGCCAUGGCCCGAAUGCCAAUCCAGGUCUCAGUCACAAACUCCUCAAUGCGGGUAACUGGGGGAUUGA
...----...........(((((..(((...)))(((....))))))))..((((((....((((((.....(((((.....).)))).)))))))))))). ( -23.80)
>DroPer_CAF1 17223 96 - 1
A------CUUCUAGUAAAUCUCGAUGAGCUUCUCGGCCAUGGCACGAAUGCCGAUCCAAGUCUCGGUCACGAACUCGUCGAUGCGCGUGACUGGGGGAUUGA
.------((((((((.....((((((((.(((..((((..((((....))))(((....)))..))))..)))))))))))........))))))))..... ( -32.62)
>consensus
A______CUUCUAAUACAUCUCGAUGACCUUCUCGGCCAUGGCACGAAUGCCAAUCCAGGUCUCGGUCACAAACUCAUCGAUGCGGGUGACUGGGGGAUUGA
................................(((((....)).)))....((((((....(((((((((................))))))))))))))). (-19.97 = -19.56 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:39 2006