Locus 2656

Sequence ID 3L_DroMel_CAF1
Location 7,372,262 – 7,372,357
Length 95
Max. P 0.754367
window4162

overview

Window 2

Location 7,372,262 – 7,372,357
Length 95
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 75.72
Mean single sequence MFE -33.23
Consensus MFE -17.19
Energy contribution -17.37
Covariance contribution 0.17
Combinations/Pair 1.36
Mean z-score -1.85
Structure conservation index 0.52
SVM decision value 0.48
SVM RNA-class probability 0.754367
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7372262 95 + 23771897
UCUGGGUUUGUUAGUCCUCUUUUUGGGCGCCACUCUUGUGGCUGCCGAACAGGAUUACGAGGGGUAAGUAU---------UGGAUCUACCUGGACCUAUCAAGG
..(((((((..(((((((....((.((((((((....))))).))).)).)))))))....(((((..(..---------...)..))))))))))))...... ( -31.90)
>DroVir_CAF1 23495 78 + 1
UUUGGGCUUGCUGACACUGCUGUUGGGCUUGGCUCUGGUGGCCGCCAAUCAAGACUAUGAAGGGUGAGUCU--------------------------AUCAAGG
...(((((.((..(((....)))..).)..)))))(((((((((((..(((......)))..)))).).))--------------------------))))... ( -23.50)
>DroSec_CAF1 16247 93 + 1
UCUGGGUUUGCUAGUCCUCUUUUUGGGCACCACUCUUGUGGCUGCCGAACAGGAUUACGAGGGGUAAGUAU---------UGGAUCUACU--GAUCCAACAAGG
........(((((.(((((.(((((((((((((....)))).))))...)))))....))))).).))))(---------((((((....--)))))))..... ( -31.20)
>DroSim_CAF1 16804 93 + 1
UCUGGGUUUGCUAGUCCUCUUUUUGGGCGCCACUCUUGUGGCUGGCGAACAGGAUUACGAGGGGUAAGUAU---------UGGAUCUACU--GACCCAACAAGG
(((..((((((((((((.......))))(((((....))))))))))))).)))....(..((((.((((.---------......))))--.))))..).... ( -34.80)
>DroEre_CAF1 18435 93 + 1
CCUGGGCUUGCUAGUGCUCCUUUUGGGCGCCACUCUUGUGGCUGCCGAUCAGGAUUACGAGGGGUAAGUAU---------GGCAGUCACU--GAUCCAUCCAGG
((((((((((((.(((.((((..(.((((((((....))))).))).)..)))).)))....)))))))((---------(((((...))--)..))))))))) ( -40.80)
>DroYak_CAF1 16777 102 + 1
UCUGGGUUUGCUAGUGCUCUUUGUGGGCGCCACUCUUGUGGCUGCCGAUCAGGAUUACGAGGGGUAAGUAUUCGCAUAGGAGCUAUCACU--UACCCAUCAAGG
.............(((.((((.((.((((((((....))))).))).)).)))).)))((.((((((((..(.((......)).)..)))--))))).)).... ( -37.20)
>consensus
UCUGGGUUUGCUAGUCCUCUUUUUGGGCGCCACUCUUGUGGCUGCCGAACAGGAUUACGAGGGGUAAGUAU_________UGGAUCUACU__GACCCAUCAAGG
......((((((.((..((((.((.((((((((....))))).))).)).))))..))....)))))).................................... (-17.19 = -17.37 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:37 2006