Locus 2655

Sequence ID 3L_DroMel_CAF1
Location 7,359,786 – 7,359,882
Length 96
Max. P 0.825241
window4161

overview

Window 1

Location 7,359,786 – 7,359,882
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 75.56
Mean single sequence MFE -28.88
Consensus MFE -16.93
Energy contribution -19.33
Covariance contribution 2.41
Combinations/Pair 1.17
Mean z-score -1.69
Structure conservation index 0.59
SVM decision value 0.70
SVM RNA-class probability 0.825241
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7359786 96 - 23771897
AACAUCUUACGGCUGCAAAGGAGUUUAAAGGCACGUGAAGCCCUAGAUCUGCCCGAGGGCAUUCAAGCCCUGCCGCCCGGACUCUUCCCGCGACAA
...........(.(((..((((((((...((((..(((((((((.(.......).))))).)))).....))))....))))))))...))).).. ( -26.40)
>DroSec_CAF1 3840 96 - 1
AACAUUGUACGGCUGCAAAAGAGCUUAAAGGCACGUGAAGCCCAAGAUCUGCCCGAGGGCAUUCAAGCCCUGCAGCCCGGACUCUUCCCGCGGCAA
.....((((.((((........(((....)))...((((((((..(.......)..)))).)))))))).))))((((((.......))).))).. ( -31.00)
>DroSim_CAF1 4314 96 - 1
AACAUUGUACGGCUGCAAAAGAGUUUAAAGGCACGUGAAGCCCAAGAUCUGCCCGAGGGCAUUCAAGCCCUGCAGCCCGGACUCUUCCCGCGGCAA
...........(((((..((((((((...(((.......)))...(..((((...(((((......)))))))))..)))))))))...))))).. ( -32.70)
>DroEre_CAF1 6342 96 - 1
AACACCGUACGGCUGCAAAGGAGUUUCAAGGCACGUGAAUCGCAAGACCUGCCCGAGGGCAUUCAAGCCCUGCCUCCGGGACUCUUUCCGCGGCAA
...........(((((.(((((((..(.((((..(((..((....))..)))...(((((......)))))))))..)..)))))))..))))).. ( -38.40)
>DroYak_CAF1 3914 96 - 1
GACAUCGUACAGCUGCAAAAUAGUUUCAAGGCACGUGAAACACAGGACCUGCCCGAGGGCAUUCAAGUCCUGCCUCCAGGACUCUUUCCGCGGCAA
...........(((((......((((((.......))))))...(((..((((....))))....(((((((....)))))))...)))))))).. ( -33.10)
>DroAna_CAF1 4086 72 - 1
GCAAUCCUUAAAAUGCAAAAGAACUCAAAA-CA----------AGGAC-------------CACAACCCUUUCCAGCGGGACUCUUUCCCCGGCAA
.............(((..............-.(----------(((..-------------......)))).....((((........))))))). ( -11.70)
>consensus
AACAUCGUACGGCUGCAAAAGAGUUUAAAGGCACGUGAAGCCCAAGACCUGCCCGAGGGCAUUCAAGCCCUGCCGCCCGGACUCUUCCCGCGGCAA
...........(((((..((((((((...((((.((..........)).))))..(((((......))))).......))))))))...))))).. (-16.93 = -19.33 +   2.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:36 2006