Locus 2654

Sequence ID 3L_DroMel_CAF1
Location 7,358,385 – 7,358,505
Length 120
Max. P 0.679235
window4160

overview

Window 0

Location 7,358,385 – 7,358,505
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.17
Mean single sequence MFE -46.25
Consensus MFE -31.25
Energy contribution -32.33
Covariance contribution 1.09
Combinations/Pair 1.38
Mean z-score -1.48
Structure conservation index 0.68
SVM decision value 0.30
SVM RNA-class probability 0.679235
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7358385 120 + 23771897
AGAUGCUGGAACGUCUUGGGCUGACAGCUCCGUCAGGCGUUCUGCUAUGCGGUCCGCCGGGUUGCGGCAAAACUCUUUUGGCCAAGGCUAUUGCCAAUGAGGCUGGCAUCAAUUUCAUAU
.((((((.....(((((((((((.((((((.....((((..((((...))))..))))))))))))))....(......).)))))))....(((.....))).)))))).......... ( -45.80)
>DroVir_CAF1 2739 120 + 1
AGAUGCUGGCACGCCUCGGCCUGGAGGCGCCAUCGGGUGUAUUGCUCUGCGGCCCACCCGGCUGCGGCAAAACUUUGCUGGCCAAGGCCAUUGCCAACGAGGCGGGCAUUAACUUUAUAU
.((((((....((((((((((....)))((..(((((((..((((...))))..)))))))..))(((((........((((....)))))))))..))))))))))))).......... ( -53.20)
>DroGri_CAF1 2925 120 + 1
AGAUGUUGGCACGCCUCGGCCUGGAGGCACCAUCGGGUGUGCUUCUCUGUGGACCGCCUGGCUGUGGCAAAACACUGCUGGCCAAGGCCAUUGCCAACGAGGCGGGCAUUAAUUUCAUUU
.((.((((((.((((((((((.((.((..((((.(((.......))).)))).)).)).)))..((((((........((((....)))))))))).))))))).))..)))).)).... ( -48.50)
>DroWil_CAF1 2688 120 + 1
AGAAAUUGGAACGUCUUGGCCUGACAGCGCCAUCUGGUGUACUCCUUUGCGGUCCACCGGGAUGCGGCAAAACUCUCCUGGCCAAGGCCAUUGCCAAUGAGGCGGGCAUUAAUUUUAUUU
.((((((((.....(((((((.((.((.(((.(((((((.(((.......))).)))))))....)))....)).))..)))))))(((...(((.....))).))).)))))))).... ( -39.90)
>DroMoj_CAF1 2597 120 + 1
AUAUGUUAGUACGCCUCGGCCUGGAGGCGCCCUCCGGCGUGCUGCUCUGCGGACCACCAGGUUGUGGCAAGACGUUGUUAGCCAAGGCCAUAGCCAAUGAGGCGGGCAUUAACUUUAUAU
....((((((..(((((......)))))((((.((((.(..((((...))))..).)).(((((((((.....((.....))....))))))))).....)).))))))))))....... ( -47.70)
>DroAna_CAF1 2576 120 + 1
AGAAGCUGGAGCGCCUGGGCUUGACCGCUCCUUCGGGUGUCCUUCUUUGCGGCCCUCCCGGCUGUGGCAAGACUCUGUUGGCCAAGGCCAUUGCCAAUGAGGCUGGCAUCAACUUUAUAU
.((.((.((((.(((.((......))((.((....)).))..........))).))))(((((.((((((........((((....))))))))))....))))))).)).......... ( -42.40)
>consensus
AGAUGCUGGAACGCCUCGGCCUGAAGGCGCCAUCGGGUGUACUGCUCUGCGGACCACCCGGCUGCGGCAAAACUCUGCUGGCCAAGGCCAUUGCCAAUGAGGCGGGCAUUAACUUUAUAU
.((((((....((((((((((.....(((((....)))))......((((((((.....))))))))............))))..(((....)))...)))))))))))).......... (-31.25 = -32.33 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:35 2006