Locus 2653

Sequence ID 3L_DroMel_CAF1
Location 7,350,815 – 7,350,919
Length 104
Max. P 0.518302
window4159

overview

Window 9

Location 7,350,815 – 7,350,919
Length 104
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 87.39
Mean single sequence MFE -24.84
Consensus MFE -16.36
Energy contribution -17.08
Covariance contribution 0.72
Combinations/Pair 1.08
Mean z-score -1.99
Structure conservation index 0.66
SVM decision value -0.03
SVM RNA-class probability 0.518302
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7350815 104 + 23771897
UAGAGUGUGACGUAUCUCUAGAAGUCAUAGCUAAUGAACCCAUGAACUCGAAGGUAAAUUCGUUUACUUUCGUAGAAUAGGUAGUAGUA--CAGAAACUAUAAAUG
(((..((((((...((....)).)))))).)))....(((.((...((((((((((((....)))))))))).)).)).))).(((((.--.....)))))..... ( -23.10)
>DroSec_CAF1 1674 104 + 1
UAGAG--UGACGUAUCUCUAGAAUUUAUAGCAAAUGAACCCAUGAACUCGAAGGUAAAUUCGUUUACUUUCGUAGGUUGGGUACUACUAACCAGAAACUAUAAAUG
(((((--........)))))..((((((((..................((((((((((....))))))))))..((((((......)))))).....)))))))). ( -27.40)
>DroSim_CAF1 1666 104 + 1
UAGAG--UGACGUAUCUCUAGAAUUUAUAGCAAAUGAACCCAUGAACUCGAAGGUAAAUUCGUUUACUUUCGUAGGUUGGGUACUACUAACCAGAAACUAUAAAUG
(((((--........)))))..((((((((..................((((((((((....))))))))))..((((((......)))))).....)))))))). ( -27.40)
>DroEre_CAF1 2763 99 + 1
UAGAG--UGACGUAU--UUAGAAGUUAUGGCAAAUGAACCCAUGAACUCGAAGGUUUACUCGUUUACUUUUGUAGGAUGGGUA-UAGUA--CAAAGACUAUAAUUG
..(.(--((((....--......)))))..)......((((((...(((((((((..(....)..))))))).)).))))))(-((((.--.....)))))..... ( -18.80)
>DroYak_CAF1 1709 99 + 1
UAGAG--UGACGUGU--UUAGAAGUCACAGCAAAUGAACCCAUGAACUCGAAGGUAAACUCGUUUACUUUUGUAGGAUGGGUA-UAGUA--CAGAGACUAUAAGUG
....(--((((....--......))))).((......((((((...((((((((((((....)))))))))).)).))))))(-((((.--.....)))))..)). ( -27.50)
>consensus
UAGAG__UGACGUAUCUCUAGAAGUUAUAGCAAAUGAACCCAUGAACUCGAAGGUAAAUUCGUUUACUUUCGUAGGAUGGGUA_UAGUA__CAGAAACUAUAAAUG
..................(((...((((.....))))((((((...((((((((((((....)))))))))).)).))))))...............)))...... (-16.36 = -17.08 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:34 2006