Locus 2651

Sequence ID 3L_DroMel_CAF1
Location 7,346,095 – 7,346,198
Length 103
Max. P 0.651412
window4156

overview

Window 6

Location 7,346,095 – 7,346,198
Length 103
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.46
Mean single sequence MFE -29.42
Consensus MFE -16.49
Energy contribution -15.72
Covariance contribution -0.78
Combinations/Pair 1.43
Mean z-score -1.64
Structure conservation index 0.56
SVM decision value 0.25
SVM RNA-class probability 0.651412
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7346095 103 - 23771897
CAUGCGUUCCAAGGCCGACGAAGUGAUCGGCAGCUGUUUGCGCUUGUGCAGUCUCUUGAUCUCAUUGCACAAGCUCUCGGCCAUUUUGUCUGUGU----UUCGAAA--A
......(((.((.((.(((((((((..((((((....))))(((((((((((...........)))))))))))...))..))))))))).)).)----)..))).--. ( -35.30)
>DroVir_CAF1 308 95 - 1
CAUACGCUCCAAUGCGGCCGAUGUAAUGGGCAAUUGCUUACGCUUGUGCAGUCUUUUGAUUUCAUUGCACAAAUUCUCAGCCAUUUUAUCUGCAA--------------
....(((......)))((.((((.(((((((....))......(((((((((...........)))))))))........))))).)))).))..-------------- ( -25.50)
>DroPse_CAF1 301 107 - 1
CAUGCGCUCAAUGGCGGCCGCUGUGAUCGGCAAUUGCUUGCGCUUGUGCAGUCUUUUGAUUUCGUUGCACAAGUUCUCGGCCAUUUUGUCUGCAGGUGAAUGGCGA--U
....((((....))))(((((((....))))..(..(((((((((((((((((....))).....)))))))))....(((......))).)))))..)..)))..--. ( -37.30)
>DroGri_CAF1 312 102 - 1
CAUGCGCUCCAACGCAGCCGAUGUUAUUGGCAAUUGUUUGCGCUUGUGCAGUCUCUUGAUCUCAUUGCACAGAUUCUCAGCCAUUUUAUCUACGCGA-------AAGAA
..((((......))))((.((((....((((....(((((.((..(((..(((....)))..))).)).))))).....))))...))))...))..-------..... ( -23.90)
>DroWil_CAF1 314 95 - 1
CAUGCGUUCCAAUGCGGCUCCUGUGAUGGGCAAUUGUUUGCGUUUGUGCAGUCUUUUGAUUUCAUUGCACAAAUUCUCGGCCAUUUUGUCUGCGU--------------
...((((..(((...((((((......))((((....))))(((((((((((...........)))))))))))....))))...)))...))))-------------- ( -24.90)
>DroAna_CAF1 312 94 - 1
CAUCCGCUCCAGUGCCGCUGCCGUUAUGGGCAGCUGCUUGCGCUUGUGCAGUCUCUUGAUCUCGUUGCACAAGUUCUCAGCCAUCUUAUCUGA---------------A
.....(((.(((.((.((((((......)))))).))))).((((((((((((....))).....)))))))))....)))............---------------. ( -29.60)
>consensus
CAUGCGCUCCAAUGCGGCCGAUGUGAUGGGCAAUUGCUUGCGCUUGUGCAGUCUCUUGAUCUCAUUGCACAAAUUCUCAGCCAUUUUAUCUGCGU_____________A
.....((......)).((((.......))))....(((...((((((((((((....))).....)))))))))....)))............................ (-16.49 = -15.72 +  -0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:30 2006