Locus 2650

Sequence ID 3L_DroMel_CAF1
Location 7,341,848 – 7,341,944
Length 96
Max. P 0.652848
window4155

overview

Window 5

Location 7,341,848 – 7,341,944
Length 96
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.37
Mean single sequence MFE -28.27
Consensus MFE -18.48
Energy contribution -17.35
Covariance contribution -1.13
Combinations/Pair 1.38
Mean z-score -1.30
Structure conservation index 0.65
SVM decision value 0.25
SVM RNA-class probability 0.652848
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7341848 96 + 23771897
CCGGGCUCCGUGAUGUCCACCGUGUCGUACUUGAUGUUCUUGCUGUCCAGGAUCAUCAGAACGCGCUGCUGGCGCUUCUUCACCUGUAA--AAUUGG-----------A
..((((........)))).(((.....(((.(((((.(((((.....))))).)))))(((.((((.....))))))).......))).--...)))-----------. ( -27.50)
>DroVir_CAF1 32059 104 + 1
CCGGGCUCUGUGAUGUCAACGGUAUCGUACUGAAUGUUCUUGCUGUCCAGGAUCAUCAAAACGCGCUGUUGGCGUUUUUUCACCUAA-----AAUCGCACGUAACAGUA
.......((((.(((((((((((..(((..(((.((.(((((.....))))).)))))..))).)))))))(((.((((......))-----)).))))))).)))).. ( -27.10)
>DroPse_CAF1 6745 98 + 1
CCGGGUUCUGUGAUAUCCACGGUAUCAUACUGGAUGUUCUUGCUGUCCAGGAUCAUAAGGACGCGCUGUUGGCGCUUCUUAACCUGCAA----UUAGA-------AAUA
.(((((..((((((((.....))))))))((((((((....)).)))))).....((((((.((((.....)))))))))))))))...----.....-------.... ( -31.30)
>DroWil_CAF1 7252 93 + 1
CCGGGCUCUGUGAUAUCCACAGUGUCAUAUUGGAUGUUCUUGCUAUCCAAGAUCAUCAGAACACGCUGUUGGCGUUUCUUCACCUAAAG--AA-GA-------------
...(((.(((((.....))))).)))......((((.(((((.....))))).)))).....((((.....)))).(((((.......)--))-))------------- ( -26.50)
>DroMoj_CAF1 26128 108 + 1
CCGGGUUCUGUUAUGUCAAUGGUAUCGUACUGAAUGUUCUUGCUGUCCAAGAUCAUCAGAACUCGCUGUUGGCGCUUCUUCACCUAAU-GGAAAUAGAUCAAAAUAAUA
...(((.(((((..(((((((((...((.((((.((.(((((.....))))).)))))).))..))))))))).........((....-)).))))))))......... ( -25.90)
>DroPer_CAF1 6503 98 + 1
CCGGGUUCUGUGAUAUCCACGGUAUCAUACUGGAUGUUCUUGCUGUCCAGGAUCAUAAGGACGCGCUGUUGGCGCUUCUUAACCUGCAA----UUAGA-------AAUA
.(((((..((((((((.....))))))))((((((((....)).)))))).....((((((.((((.....)))))))))))))))...----.....-------.... ( -31.30)
>consensus
CCGGGCUCUGUGAUAUCCACGGUAUCAUACUGGAUGUUCUUGCUGUCCAGGAUCAUCAGAACGCGCUGUUGGCGCUUCUUCACCUAAAA___AUUAGA_______AAUA
...(((.(((((.....))))).))).......(((.(((((.....))))).))).((((.((((.....)))))))).............................. (-18.48 = -17.35 +  -1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:29 2006