Locus 2647

Sequence ID 3L_DroMel_CAF1
Location 7,327,694 – 7,327,786
Length 92
Max. P 0.705486
window4150

overview

Window 0

Location 7,327,694 – 7,327,786
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -13.42
Consensus MFE -11.24
Energy contribution -11.93
Covariance contribution 0.69
Combinations/Pair 1.07
Mean z-score -1.59
Structure conservation index 0.84
SVM decision value 0.36
SVM RNA-class probability 0.705486
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7327694 92 - 23771897
CUAACUUAUGUACAUACCAAGCAUACAAUAACGUAUUUCUACGUUACAUUGUUUUCUAUUUAAAUACACAUUUAAAACAGUUAGGAAACCUA
((((((............(((((.....(((((((....)))))))...)))))....(((((((....)))))))..))))))........ ( -13.50)
>DroSec_CAF1 13562 92 - 1
CUAACUUAUGUACAUACCAAGCAUACGAUAACGUAUUUUUACGUUACAUUGUUUUCUAUUUAAGUACACAUUUAAAACAGUUAGGAAACCUA
((((((..((((((((..(((((...(.(((((((....))))))))..)))))..)))....)))))..........))))))........ ( -14.40)
>DroSim_CAF1 14011 92 - 1
CUAACUUAUGUACAUACCAAGCAUACGAUAACGUAUUUUUACGUUACAUUGUUUUCUAUUUAAGUACACAUUUAAAACAGUUAGGAAACCUA
((((((..((((((((..(((((...(.(((((((....))))))))..)))))..)))....)))))..........))))))........ ( -14.40)
>DroYak_CAF1 13685 88 - 1
CUAAGUUAUGUACAUACCAAGCAUACGGUAACGUAAUUCUACGUUAAAUUGUUUACUAUUUAAAUACAAAGUUGAAAGA----GAAAACUUA
.((((((...........(((((.....(((((((....)))))))...))))).((.(((((........))))))).----...)))))) ( -11.40)
>consensus
CUAACUUAUGUACAUACCAAGCAUACGAUAACGUAUUUCUACGUUACAUUGUUUUCUAUUUAAAUACACAUUUAAAACAGUUAGGAAACCUA
......(((((.........)))))...(((((((....)))))))....(((((((((((((((....))))))).....))))))))... (-11.24 = -11.93 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:25 2006