Locus 2645

Sequence ID 3L_DroMel_CAF1
Location 7,315,401 – 7,315,495
Length 94
Max. P 0.787967
window4148

overview

Window 8

Location 7,315,401 – 7,315,495
Length 94
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 77.97
Mean single sequence MFE -37.60
Consensus MFE -13.37
Energy contribution -16.07
Covariance contribution 2.70
Combinations/Pair 1.10
Mean z-score -2.73
Structure conservation index 0.36
SVM decision value 0.58
SVM RNA-class probability 0.787967
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7315401 94 - 23771897
GUAGAAUGUGUGA-CCCAUUG------------------GCAGGGGCAUGG-GUAGU----GCAACCGCUACUCAGCUGCUGCCGUGAUAGUAAAACUCAUCUCAGUAGGGCGCAUAU
.....(((((((.-(((...(------------------((((.(((.(((-(((((----(....)))))))))))).)))))(.(((((.....)).))).)....)))))))))) ( -42.20)
>DroGri_CAF1 1477 101 - 1
GUAGAAACUGUGG-UGCAGUU--G-------CC------GCAAAUGCACCACCCAAAGCAG-CCGCUGUCACUCAGCUGCUGCCGUUAUAAUAAAACUCAUCUCAGUAGGGCGCAUAA
((.......((((-((((.((--(-------..------.))).))))))))((...((((-(.((((.....)))).)))))............(((......))).))))...... ( -30.80)
>DroSec_CAF1 1392 94 - 1
GUAGAAAGUGUGA-CCCAUGG------------------GCAGGGGCAUGG-GUAGU----GCAACCGCUACUCAGCUGCUGCCGUGAUAGUAAAACUCAUCUCAGUAGGGCGCAUAU
.......(((((.-(((...(------------------((((.(((.(((-(((((----(....)))))))))))).)))))(.(((((.....)).))).)....)))))))).. ( -40.80)
>DroSim_CAF1 1388 94 - 1
GUAGAAAGUGUGA-CCCAUGG------------------GCAGGGGCAUGG-GUAGU----GCAACCGCUACUCAGCUGCUGCCGUGAUAGUAAAACUCAUCUCAGUAGGGCGCAUAU
.......(((((.-(((...(------------------((((.(((.(((-(((((----(....)))))))))))).)))))(.(((((.....)).))).)....)))))))).. ( -40.80)
>DroYak_CAF1 1376 112 - 1
GUAGACAGUGUGG-CCCCUGGCUAGGGACACGGACAUUGGCAGGGGCAUGG-GUAGU----GCAACCGCUACUCAGCUGCUGCCGUGAUAGUAAAACUCAUCUCAGUAGGGCGCAUAU
.......((((((-(((...(((.((((......(((.(((((.(((.(((-(((((----(....)))))))))))).))))))))..((.....))..))))))).)))).))))) ( -44.40)
>DroAna_CAF1 1227 97 - 1
GUAGAGCGUGUGGAGCCACGG----------UG------ACAUAGUCAUGG-GAAAU----GCGACCGCCACUCAGCUGCUGCCGUGAUAGUACAACUCAUCUCAGUAGGGCGCAUAU
.....((((((((.((..(.(----------((------((...))))).)-.....----)).....))))....((((((..((((.........))))..)))))).)))).... ( -26.60)
>consensus
GUAGAAAGUGUGA_CCCAUGG__________________GCAGGGGCAUGG_GUAGU____GCAACCGCUACUCAGCUGCUGCCGUGAUAGUAAAACUCAUCUCAGUAGGGCGCAUAU
.......(((((..(((......................((((.(((.(((.(((((..........))))))))))).)))).(.(((((.....)).))).)....)))))))).. (-13.37 = -16.07 +   2.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:23 2006