Locus 2644

Sequence ID 3L_DroMel_CAF1
Location 7,315,084 – 7,315,189
Length 105
Max. P 0.797362
window4147

overview

Window 7

Location 7,315,084 – 7,315,189
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 74.37
Mean single sequence MFE -26.73
Consensus MFE -7.59
Energy contribution -11.96
Covariance contribution 4.37
Combinations/Pair 1.10
Mean z-score -3.93
Structure conservation index 0.28
SVM decision value 0.61
SVM RNA-class probability 0.797362
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7315084 105 - 23771897
AAAGCACUAUCUAGGUCUUAAUA----------UGUAAGUAAGUAUGGAAAACGUAGUCAUCUGAUAAGAAUUAACUU-----UAGUACACACAUAUUUGGAAAAGAAAGUGCGACAUUU
...(((((.(((...(((.((((----------(((..(((..((((.....))))....(((....)))........-----...)))..))))))).)))..))).)))))....... ( -23.10)
>DroSec_CAF1 1070 115 - 1
AAAGCACUUUCUUGGUCUUUAUUACAUACUUAUUAUAAGUAAGUAUGUACAACUUAGUCAUCUGAUAAGAAUUAACUU-----UAGUACAUACAAAUUUGCAAAAGAAAGUGCGACAUUU
...((((((((((.............((((((...)))))).((((((((.....(((..(((....)))....))).-----..))))))))..........))))))))))....... ( -28.20)
>DroSim_CAF1 1071 105 - 1
AAAGCACUUUCUUGGUCUUUAUU----------UGCAAGUAAGUAUGUACAACUUAGUCAUCUGAUAAGAAUUAACUU-----UAGUACAUACAUAUUUGCAAAAGAAAGUGCGACAUUU
...((((((((((.........(----------((((((((.((((((((.....(((..(((....)))....))).-----..)))))))).)))))))))))))))))))....... ( -34.00)
>DroYak_CAF1 1070 95 - 1
AAAGCUCUUUCUAGGGCCUAACU----------UGCAAGUAAUAAUAGUAAACUUAGUCAACUGAUAAGAAUUAGCUUGAACUAAGUACACACAUACUAG---------------CAUUC
...(((((....)))))......----------(((.((((......((..(((((((((((((((....))))).))).)))))))..))...)))).)---------------))... ( -21.60)
>consensus
AAAGCACUUUCUAGGUCUUAAUU__________UGCAAGUAAGUAUGGAAAACUUAGUCAUCUGAUAAGAAUUAACUU_____UAGUACACACAUAUUUGCAAAAGAAAGUGCGACAUUU
...((((((((((......................((((((.(((((.....((((.((....)))))).....(((.......))).))))).))))))...))))))))))....... ( -7.59 = -11.96 +   4.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:22 2006