| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,294,491 – 7,294,611 |
| Length | 120 |
| Max. P | 0.739081 |
| Location | 7,294,491 – 7,294,611 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Mean single sequence MFE | -47.47 |
| Consensus MFE | -29.06 |
| Energy contribution | -29.82 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.739081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7294491 120 - 23771897 CGCCACGUGGCCAAAGACGAAUCCCUCAGCGCGUAUAAACUGCAGCUGACUGGCUUUGGCAAUGGCCAGUGCUUGUUUAUUGCCGCAGGCGAGCACUUGGACACCACACGGAAUCUCCUG .....(((((((((((......((.((((((((.......))).)))))..)))))))))..((((((((((((((((........)))))))))).)))...))))))).......... ( -40.80) >DroVir_CAF1 131864 120 - 1 GGCCACAUGGCCAAAGACGAAGCUCUCGGCACGUAUGAACUGCAGCUGGCAGGCCUUGGCUAUGGCCAGCGCCUGUUUGUUGCCGCAGGCAACCACCUGGACGCCGCAGGGCGUCUGGCG ((((....))))..((((...(((((((((...........(((((..((((((.(((((....))))).))))))..)))))..((((......))))...)))).))))))))).... ( -57.90) >DroGri_CAF1 101529 120 - 1 GGCAACAUGGCCAUAGACGAAGCCCUCGGCGCGUAUGAACUGCAGCUGACUGGCCUUGGCUAUGGCUAGUGCCUGGCGAUUGCCACAGGCGAGCACCUGGACGCCGCAGGGUGUCUCCUU ((((...(((((((((.(((.(((.((((((((.......))).)))))..))).))).))))))))).))))((((....))))((((......))))((((((....))))))..... ( -54.90) >DroWil_CAF1 105299 120 - 1 GGCGACAUGACCAAAAACAAAGCCCUCGGAGCGUAUGAAUUGCAAUUGACUGGCCUUUGCGAUGGCCAGGGCUUGUUUAUUGCCACAGGCCAGAACUUGAACACCGCAGGGCACAUGCGG ..((.((((............((((((((.(((.......)))......((((((........))))))(((((((........)))))))............))).))))).)))))). ( -40.22) >DroMoj_CAF1 99038 120 - 1 GGCCACGUGGCCGAAGACAAAGCCUUCGGCGCGUAUGAAUUGCAGCUGGCAGGCCUUGGCUAUGGCCAGCGAUUGCUUGUUGCCACAGGCGAGCACCUGCACGCCGCAAGGCGUCUGCUU ((((....))))..((((...((((((((((.(((.(...(((.((((((.(((....)))...))))))..((((((((....)))))))))))).))).))))).))))))))).... ( -58.50) >DroAna_CAF1 67368 120 - 1 CGCCACGUGACCGAAAACGAAUCCCUCACAGCGUAUAAAUUGCAGUUGGCUGGCUUUGGCAAUAGCCAAUGCUUGUUUAUUCCCGCAAGCCAGGACCUGGACGCCACACGGAGUCUCCUU .((...((((..((.......))..)))).(((.((((((.(((.(((((((((....))..))))))))))..))))))...)))..)).((((....(((.((....)).))))))). ( -32.50) >consensus GGCCACAUGGCCAAAGACGAAGCCCUCGGCGCGUAUGAACUGCAGCUGACUGGCCUUGGCUAUGGCCAGUGCUUGUUUAUUGCCACAGGCGAGCACCUGGACGCCGCAGGGCGUCUCCUG ((((....)))).........(((((....((((.......(((((.(((.(((.(((((....))))).))).))).)))))..((((......)))).))))...)))))........ (-29.06 = -29.82 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:21 2006