Locus 2640

Sequence ID 3L_DroMel_CAF1
Location 7,282,677 – 7,282,770
Length 93
Max. P 0.910717
window4142

overview

Window 2

Location 7,282,677 – 7,282,770
Length 93
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 81.97
Mean single sequence MFE -24.16
Consensus MFE -21.30
Energy contribution -21.58
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.89
Structure conservation index 0.88
SVM decision value 1.07
SVM RNA-class probability 0.910717
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7282677 93 - 23771897
UC-UUUUUUUUAUUGUUGUUGUGUAAUUGUGCGCACCAAAAAA--------A-GGGGGGAAAAGUGGGGGAGUUGCCCAAAAGACGACGGUGAAAUGGGUUAA
((-(...((((((((((((((((((....))))).((......--------.-.))........((((.......))))...))))))))))))).))).... ( -21.70)
>DroSec_CAF1 40818 89 - 1
-C--UUUUUUUAUUGUUGUUGUGUAAUUGUGCGCACCAAAAAA-----------GGGGGGAAAAUGGGGGAGUCGCCCAAAAGACGACGGUGAAAUGGGUUAA
-(--(..((((((((((((((((((....))))).........-----------.(((.((...........)).)))....)))))))))))))..)).... ( -23.60)
>DroSim_CAF1 44308 98 - 1
-C--UUUUUUUAUUGUUGUUGUGUAAUUGUGCGCACCGAAAAA-GGAGGAAA-AGGGGGAAAAGUGGGGGAGUCCCCCAAAAGACGACGGUGAAAUGGGUUAA
-(--(..((((((((((((((((((....))))).((......-))......-.((((((............))))))....)))))))))))))..)).... ( -29.90)
>DroEre_CAF1 40947 102 - 1
GCUUUCUUUUUAUUGUUGUUGUGUAAUUGUGCGCACCAAAAAA-AAAGUAGCAGGAGGGAAAAGUGGGGGAGUACCCCAAAAGACGACGAUGAAAUGGGUUGA
((((...((((((((((((((((((....))))).........-....................(((((.....)))))...))))))))))))).))))... ( -27.30)
>DroYak_CAF1 41696 95 - 1
U-UUUUUUUUUAUUGUUGUUGUGUAAUUGUGCGCACCGAAAAAAAAAGUCG-------UGAAAGUGGGGGACUUUCCCAAAAGAAGACGAUGAAAUGGGUUAG
.-.....(((((((.(((.((((((....)))))).)))........(((.-------......(((((.....)))))......))))))))))........ ( -18.32)
>consensus
_C_UUUUUUUUAUUGUUGUUGUGUAAUUGUGCGCACCAAAAAA___AG______GGGGGAAAAGUGGGGGAGUCCCCCAAAAGACGACGGUGAAAUGGGUUAA
.......((((((((((((((((((....)))))..............................(((((.....)))))...)))))))))))))........ (-21.30 = -21.58 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:17 2006