Locus 264

Sequence ID 3L_DroMel_CAF1
Location 744,133 – 744,223
Length 90
Max. P 0.519833
window396

overview

Window 6

Location 744,133 – 744,223
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 83.39
Mean single sequence MFE -30.17
Consensus MFE -17.33
Energy contribution -18.00
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.58
Structure conservation index 0.57
SVM decision value -0.03
SVM RNA-class probability 0.519833
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 744133 90 + 23771897
UUUUGGCAAAGAUCCUUUGGGUCCAACGCGCGGCGCAUUUCAAUGCUGCACGUGCAGG----CCA-AAAGCGAACCUUCUUCGGUUUGUCUUCUA
(((((((...(((((...)))))....(((((((((((....)))).)).)))))..)----)))-)))(((((((......)))))))...... ( -34.80)
>DroPse_CAF1 109447 89 + 1
UUUUGGCAAAGAUCCUUUGGGUCCAAUGCGCGGCGCAUUUCAAUGCUGCACGUGCAAC----CGAAAAAGCGAACCUUCUUCGGUUUCUCACC--
((((((....(((((...)))))...((((((((((((....)))).)).)))))).)----)))))....(((((......)))))......-- ( -27.10)
>DroGri_CAF1 133945 92 + 1
AUUUGGCAAAGAUCCUUGGGGCACAACGCGCUGCGCAUUUCAAUGCUGCACGUGCAGCCCAACCA-AAAACCAAAGU-CGUUGC-UUGCCCCUCG
.................(((((((((((((((((((((....)))).))).))))..........-...((....))-.)))).-.))))))... ( -26.40)
>DroYak_CAF1 106078 90 + 1
UUUUGGCAAAGAUCCUUUGGGUCCAACGCGCGGCGCAUUUCAAUGCUGCACGUGCAGG----CCA-AAAGCGAACCUUCUUCGCAUUGUCUUUUA
(((((((...(((((...)))))....(((((((((((....)))).)).)))))..)----)))-)))(((((.....)))))........... ( -32.90)
>DroAna_CAF1 107174 85 + 1
UUUUGGCAAAGAUCCUUUGGGUCCAACGCGCGGCGCAUUUCAAUGCUGCACGUGCAGG----CCC-AAAGCGAACCUUCUUCGCG---UCUUC--
.....((.(((((((((((((((..(((.((((((........)))))).)))...))----)))-)))).))....)))).)).---.....-- ( -32.60)
>DroPer_CAF1 114954 89 + 1
UUUUGGCAAAGAUCCUUUGGGUCCAAUGCGCGGCGCAUUUCAAUGCUGCACGUGCAAC----CGAAAAAGCGAACCAUCUUCGGUUUCUCACC--
((((((....(((((...)))))...((((((((((((....)))).)).)))))).)----)))))....(((((......)))))......-- ( -27.20)
>consensus
UUUUGGCAAAGAUCCUUUGGGUCCAACGCGCGGCGCAUUUCAAUGCUGCACGUGCAGC____CCA_AAAGCGAACCUUCUUCGCUUUGUCUCC__
..((.((...(((((...)))))....(((((((((((....)))).)).)))))..............)).))..................... (-17.33 = -18.00 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:48 2006