Locus 2639

Sequence ID 3L_DroMel_CAF1
Location 7,280,934 – 7,281,043
Length 109
Max. P 0.737679
window4141

overview

Window 1

Location 7,280,934 – 7,281,043
Length 109
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 71.74
Mean single sequence MFE -28.64
Consensus MFE -6.42
Energy contribution -6.74
Covariance contribution 0.32
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.22
SVM decision value 0.44
SVM RNA-class probability 0.737679
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7280934 109 + 23771897
UUAUUUUUCGGAGACGAUGUGAUUUGG-GGGUGGUAGGUAAAAACUGCUAGCAAAAACAAAAGGAAGUUUUCACUUUGUCCCGCUUUCCGGCGCUUGCAUCAUCUUCUGC
.........(((((.((((..(...((-((.((((((.......)))))).)....(((((..((.....))..))))))))(((....)))..)..)))).)))))... ( -30.00)
>DroSec_CAF1 39084 96 + 1
UUAUUUUUCGGAGAUGGUAUGAUUUUG-GGGUGGUAGGUAAAAACUGCUAGCAGAAACACAAGGAAAUUUUCACUUUGUCCCGCUUU-------------CAUGAUCUGC
........((((.....(((((...((-((.((((((.......))))))........((((((.........))))))))))...)-------------)))).)))). ( -20.10)
>DroSim_CAF1 37744 97 + 1
UUAUUUUUGGGAGACGGGGUGAUUUGGGGGGUGGUAGGUAAAAACUGCUAGCAGAAACAAAAGGAAAUUUUCACUUUGUCCCGCUUU-------------CAUGAUCUGC
.......((..((.(((((..(..((..((.((((((.......)))))).).....(....).....)..))..)..)))))))..-------------))........ ( -26.30)
>DroEre_CAF1 39198 89 + 1
UUAUUUUUGGUAG-----------UAG-GUGGAGCAGGUUAAACCUGCUAGCAGAAACAAAAGGACAUUUUCACUGUGUCCCGUU-U------CAUG--CCACCCACUGC
.........((((-----------(.(-((((((((((.....))))))....(((((....((((((.......)))))).)))-)------)...--))))).))))) ( -35.50)
>DroYak_CAF1 39893 102 + 1
UUAUUUUCGGUAGAUGGU------UAA-GUGAGGUGGGUGAAUUCAGCUAGCAGAAACAUAGGGACAUUUUCACUUUGUCCCGUU-GGCGCUGCUUGCAUCAUCUUCUGC
.......(((.(((((((------...-.((((.........))))((.(((((...((..((((((.........))))))..)-)...))))).))))))))).))). ( -31.30)
>consensus
UUAUUUUUGGGAGACGGU_UGAUUUAG_GGGUGGUAGGUAAAAACUGCUAGCAGAAACAAAAGGAAAUUUUCACUUUGUCCCGCUUU______C_UG___CAUCAUCUGC
............................(((.(((((.......))))).......(((.(((((.....)).)))))))))............................ ( -6.42 =  -6.74 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:16 2006