Locus 2637

Sequence ID 3L_DroMel_CAF1
Location 7,256,953 – 7,257,046
Length 93
Max. P 0.911039
window4138

overview

Window 8

Location 7,256,953 – 7,257,046
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.77
Mean single sequence MFE -20.00
Consensus MFE -12.26
Energy contribution -11.98
Covariance contribution -0.27
Combinations/Pair 1.27
Mean z-score -1.80
Structure conservation index 0.61
SVM decision value 1.07
SVM RNA-class probability 0.911039
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7256953 93 - 23771897
GAAAUUUUUU---AGUUGGCCCGGCUUCACCGCUA--CUUGGCCAGACAAAAAAAAAUAAAACAUUCUUUUCAUAGCCACAUCAAUGGUUAGCUA-UUU
....((((((---..((((((.(((......))).--...))))))..))))))...................((((((......))))))....-... ( -18.90)
>DroSec_CAF1 15720 85 - 1
GCAAUUUUUU---AGUUGGCCCGGCUUAACCGCUA--CUUGGCCAGAAA-A-------AAAGCAUUCUUUUCAUAGCCACAUCAAUGGUUAGCUA-UUU
((..((((((---..((((((.(((......))).--...))))))..)-)-------))))...........((((((......))))))))..-... ( -20.20)
>DroSim_CAF1 13791 86 - 1
GCAAUUUUUU---AGUUGGCCCGGCUCAACCGCUA--CUUGGCCAGAAAAA-------AAAGCAUUCUUUUCAUAGCCACAUCAAUGGUUAGCUA-UUU
((..((((((---..((((((.(((......))).--...))))))..)))-------)))............((((((......))))))))..-... ( -20.80)
>DroEre_CAF1 13660 82 - 1
UCAAUUUUUU---AGUUGGCCCGGCUUUCCCGCUA--CUUGGCCAAA-----------AAAGCUUUCUUUUCAUAGCCACAGCAAUGGUUAGCUG-UUU
.........(---((((((((.((.....))(((.--..((((...(-----------((((....)))))....)))).)))...)))))))))-... ( -18.90)
>DroYak_CAF1 13926 89 - 1
UCAAUUUUUU---AGUUGGCCCGGCUUUCUCGCUA--CUUGGCCAAAAAAA-----AAAAAGGUUUCUUUUCAUAGCCACAGCAAUGGUUAGCUGGUUU
....((((((---..((((((.(((......))).--...))))))..)))-----)))..((((.........)))).((((........)))).... ( -22.10)
>DroPer_CAF1 18607 79 - 1
------UUUUGCGAAUACAGCAGGCGGAAUCCCUAGCCUUGCCCAAA---A-------AAAGCUUUCUUGCCGAAGCCGCAGAAAUGGUUUG----UAC
------(((((((......((((((((....))..))).))).....---.-------...(((((......))))))))))))........----... ( -19.10)
>consensus
GCAAUUUUUU___AGUUGGCCCGGCUUAACCGCUA__CUUGGCCAAAAA_A_______AAAGCAUUCUUUUCAUAGCCACAGCAAUGGUUAGCUA_UUU
...............((((((.(((......)))......))))))...........................((((((......))))))........ (-12.26 = -11.98 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:13 2006