Locus 2635

Sequence ID 3L_DroMel_CAF1
Location 7,239,141 – 7,239,261
Length 120
Max. P 0.638579
window4135

overview

Window 5

Location 7,239,141 – 7,239,261
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.45
Mean single sequence MFE -25.66
Consensus MFE -13.54
Energy contribution -14.34
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.53
SVM decision value 0.22
SVM RNA-class probability 0.638579
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7239141 120 + 23771897
GGAUAUCUUUGAUUCUGACACGAACAGGAUCCUGUGCAUACUUUGUGCAUUGUCUAUUUCAGGUUUUUCUCCUGCCAGCACUUUUUUUUUUGCACACACAUUCAGUGUGCAGAGGUGGAU
..........(((((((.......)))))))..((((((.....)))))).(((((((((.(((.........)))..............(((((((.......)))))))))))))))) ( -32.70)
>DroSec_CAF1 20576 94 + 1
GGAUAUCUUUGAUUCUGACACGAACAGGAUCCUGUGCAUACUUUGUGCAUUGUCUAUUUCAGGUUUUCCUCCUGCCAGCACUUU-----UUGCACACAC---------------------
..........(((((((.......))))))).((((((......((((..((.......))(((.........))).))))...-----.))))))...--------------------- ( -21.00)
>DroSim_CAF1 20632 94 + 1
GGAUAUCUUUGAUUCUGACACGAACAGGAUCCUGUGCAUACUUUGUGCAUUGUCUAUUUCAGGUUUUCCUCCUGCCAGCACUUU-----UUGCAAACAC---------------------
(((((.....(((((((.......)))))))..((((((.....)))))))))))....((((.......))))...(((....-----.)))......--------------------- ( -20.00)
>DroEre_CAF1 21241 114 + 1
UGAUAUCUUUGAUUCUGACACGAACUGGAUCCUGUGCAUACU---UGCAUUGUCUGUUUCAGGUUUUCCUCCUGCCAGCACAUUU-UUCUUGUACACACAUUUAGUGUGUA--GGUGUAU
.................((((...((((.....(((((....---))))).........((((.......)))))))).......-......(((((((.....)))))))--.)))).. ( -25.70)
>DroYak_CAF1 22405 99 + 1
UGAUAUCUUUGAUUCUGACACGAACAGGAUCCUGUGCAUACU---UGCAUUGUCUAUUUCAGCUUUUCCUCCUGCCAGCACUUUU----------------UUAGUGUGUA--GGUGGAU
........((((....((((...((((....))))(((....---)))..))))....))))....(((.(((((..(((((...----------------..))))))))--)).))). ( -28.90)
>consensus
GGAUAUCUUUGAUUCUGACACGAACAGGAUCCUGUGCAUACUUUGUGCAUUGUCUAUUUCAGGUUUUCCUCCUGCCAGCACUUUU____UUGCACACAC__U_AGUGUG_A__GGUG_AU
.((((.....(((((((.......)))))))..((((((.....)))))))))).....((((.......)))).............................................. (-13.54 = -14.34 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:11 2006